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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATTGAGTCAGTGAGAAAAGAACTGCAGTCAATGCACCCAGAAGATAGGCACATTGTTGTTCTCAAGCACAATGTTTGGCGTGTAAAAGGACTAATTCAGgtgtgtattctatatctgagaaacatctgtagctttcagatttttgttagaattgtcatctcatggctctgtttggtacagctccagctccaagtttttt...

Basic information

species Zea mays
transcript GRMZM2G069970_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G069970_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os06g50380.1 (Oryza sativa), 5'ss of exon 4
TATTGAGTCAGTGAGAAAAGAACTGCAGTCAATGCACCCAGAAGATAGGCACATTGTTGTTCTCAAGCACAATGTTTGGCGTGTAAAAGGACTAATTCAGgtgtgtattctatatctgagaa-acatctgtagctttca-gatttttgttagaattgtcatctcatggctctgtttggtacagctccagctccaagtttttt
 ||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||| ||  |||||  ||  ||| |||  | ||||||| | ||  |||| | |||   |||| ||||    |    ||   | ||      ||| |   |   
CATTGAGTCAGTGAGAAAAGAATTGCAGTCAATGCACCCGGAAGATAGGCATATTGTTGTTCTCAAGCACAACGTTTGGCGTGTAAAAGGTCTAATTCAGgtgagttctctatcactatgaacacagttttagctttgaagaagtttgattgaaggatcatttcatattgcctcctgcatctgccattattcccatcatc--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5928871|gb|AW056163.1|AW056163
EST:     ACATTGTTGTTCTCAAGCACAATGTTTGGCGTGTAAAAGGACTAATTCAG                         GTTTGTAGATCAATCGGNGATGCTTATCTCAAGAAACAAGAGTTCAATAGG
genomic: ACATTGTTGTTCTCAAGCACAATGTTTGGCGTGTAAAAGGACTAATTCAGgtgtgtattc ... tacattgcagGTTTGTAGATCAATCGGTGATGCTTATCTCAAGAAGCAAGAGTTCAATAGG
EST: gi|211408450|gb|FL066151.1|FL066151
EST:     AAAGGACTAATTCAG                         GTTTGTAGATCAATCGGTGATGCTTATCTCAMGAMGCAAGAGTTCAATAGG
genomic: AAAGGACTAATTCAGgtgtgtattc ... tacattgcagGTTTGTAGATCAATCGGTGATGCTTATCTCAAGAAGCAAGAGTTCAATAGG
EST: gi|28422416|gb|CB251896.1|CB251896
EST:     ACATTGTTGTTCTCAAGCACAATGTTTGGCGTGTAAAAGGACTAATTCAG                         GTTTGTAGATCAATCGGTGATGCTTATCTCAAGAAGCAAGAGTTCAATAGG
genomic: ACATTGTTGTTCTCAAGCACAATGTTTGGCGTGTAAAAGGACTAATTCAGgtgtgtattc ... tacattgcagGTTTGTAGATCAATCGGTGATGCTTATCTCAAGAAGCAAGAGTTCAATAGG
EST: gi|93283060|gb|EB675324.1|EB675324
EST:     ACATTGTTGTTCTCAAGCACAATGTTTGGCGTGTAAAAGGACTAATTCAG                         GTTTGTAGATCAATCGGTGATGCTTATCTCAAGAAGCAAGAGTTCAATAGG
genomic: ACATTGTTGTTCTCAAGCACAATGTTTGGCGTGTAAAAGGACTAATTCAGgtgtgtattc ... tacattgcagGTTTGTAGATCAATCGGTGATGCTTATCTCAAGAAGCAAGAGTTCAATAGG
EST: gi|78073908|gb|DV502342.1|DV502342
EST:     ACATTGTTGTTCTCAAGCACAATGTTTGGCGTGTAAAAGGACTAATTCAG                         GTTTGTAGATCAATCGGTGATGCTTATCTCAAGAAGCAAGAGTTCAATAGG
genomic: ACATTGTTGTTCTCAAGCACAATGTTTGGCGTGTAAAAGGACTAATTCAGgtgtgtattc ... tacattgcagGTTTGTAGATCAATCGGTGATGCTTATCTCAAGAAGCAAGAGTTCAATAGG
EST: gi|5268629|gb|AI770593.1|AI770593
EST:     ACATTGTTGTTCTCAAGCACAATGTTTGGCGTGTAAAAGGACTAATTCAG                         GTTTGTAGATCAATCGGTGATGCTTATCTCAAGAAACAAGAGTTCAATAGG
genomic: ACATTGTTGTTCTCAAGCACAATGTTTGGCGTGTAAAAGGACTAATTCAGgtgtgtattc ... tacattgcagGTTTGTAGATCAATCGGTGATGCTTATCTCAAGAAGCAAGAGTTCAATAGG