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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGTATGTTGGCAACAAATCGGCCGTCTTTCCCCTGCAGCTCCTTGGCTTTGATGTGGATCCAATAAACTCTGTACAGTTTTCTAATCATACAGgtaaatgtatatcgtggatgtacacaatctcgtacaattcacttgggacacataaacaattccagttgtgtgttatctcag

Basic information

species Zea mays
transcript GRMZM2G069758_T04
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G069758_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os12g40830.3 (Oryza sativa), 5'ss of exon 3
GGGTATGTTGGCAACAAATCGGCCGTCTTTCCCCTGCAGCTCCTTGGCTTTGATGTGGATCCAATAAACTCTGTACAGTTTTCTAATCATACAGgtaaatgtatatcgtggat-gtacacaatctcgtacaattcacttgggacacataaacaattcca-gttgtgtgttatctcag
|| || |||||||||||||| || |||||||||||||| ||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||| | ||     | |  | || ||  ||| |           |||  |||| | || ||||||  ||| | |  |||| |||
GGATACGTTGGCAACAAATCAGCAGTCTTTCCCCTGCAACTCCTGGGCTTTGATGTGGATCCGATAAACTCGGTACAGTTTTCTAATCATACAGgtagaggtgggctgcgcttcgttcaacatcgcacgtgcaatctttgacacacctgaataattccctgttatttcatatcccag

upper sequence: GRMZM2G069758_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA18G04360.1 (Glycine max), 5'ss of exon 3
GGGTATGTTGGCAACAAATCGGCCGTCTTTCCCCTGCAGCTCCTTGGCTTTGATGTGGATCCAATAAACTCTGTACAGTTTTCTAATCATACAGgtaaatgtatatcgtggatgtaca--caatctcgtacaattcacttgggacacataaacaattccagttgtgtgttatctcag---------------------------------------------------------------------------------
 |||||||||| || ||||| || ||||| || ||||| || || || | |||||| |||||||| || || || |||||||| ||||||||||| ||    |     |   | | ||  ||   ||  |  | ||  | |    |  ||     |  | | ||| ||| | |                                                                                     
-GGTATGTTGGTAATAAATCCGCTGTCTTCCCTCTGCAACTACTGGGATATGATGTCGATCCAATTAATTCCGTGCAGTTTTCGAATCATACAGGcaagctgagtctttaatttttcattcagcttctcaggactctgtggcttgatttatggtgtgac-gctgtctgtcaacgtgaataagttttggtgtggtatggtgtgcttgattaagtaattctgcagttgtggtttgataaatttgatggctataatgcagg

upper sequence: GRMZM2G069758_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA11G33970.1 (Glycine max), 5'ss of exon 3
GGGTATGTTGGCAACAAATCGGCCGTCTTTCCCCTGCAGCTCCTTGGCTTTGATGTGGATCCAATAAACTCTGTACAGTTTTCTAATCATACAGgtaaatgtatatcgtggatgtaca--caatctcgtacaattc----acttgggacacataa--acaattccagt---tgtgtgttatctcag----------------------------------------------------------------------
||||||||||| || ||||| || ||||| || |||||  | || || | ||||||||||||||| || ||||| |||||||| ||||||||||| ||    |     |   | | ||  ||   ||  |  ||||     ||||  | ||      ||  |  | ||   ||||  | |  | ||                                                                      
GGGTATGTTGGTAATAAATCCGCTGTCTTCCCTCTGCAATTACTGGGATATGATGTGGATCCAATTAATTCTGTGCAGTTTTCGAATCATACAGgcaagctgagtctttaatttttcattcagcttctcaggattctgtggcttgatatacggtgtgacgctgtctgtcaatgtgaataagtttaggtgtggtatggtatgcttgattaagtaattctgcagttgtggtttgataaatttgatggttataatgcag

upper sequence: GRMZM2G069758_T02 (Zea mays), 5'ss of exon 4
lower sequence: AT5G37850.3 (Arabidopsis thaliana), 5'ss of exon 3
GGGTATGTTGGCAACAAATCGGCCGTCTTTCCCCTGCAGCTCCTTGGCTTTGATGTGGATCCAATAAACTCTGTACAGTTTTCTAATCATACAGgtaaatgtatatcgtggatgtacacaatctcgtac-----aattcacttgggacacataaacaattccagttgtgtgttatctcag------------------------------
|| |||||||| |||||||| || |||||||| || ||  |  | || | ||||||||||||||| ||||||||||| || || ||||||||||||||   |   ||   |   |  | |  ||  |       || | |||   | |  ||   |  ||   | ||| | | |    |                               
GGATATGTTGGTAACAAATCAGCTGTCTTTCCTCTTCAATTGTTGGGGTATGATGTGGATCCAATCAACTCTGTACAATTCTCGAATCATACAGgtaatatttggtcacagtaatgtagagcctaatgttcctgaaattactgttgtcgtatcttcg-ttattggtgtatctgaatctactgatttggcattactaaaacttttttccag

upper sequence: GRMZM2G069758_T02 (Zea mays), 5'ss of exon 4
lower sequence: Vv14s0006g01660.t01 (Vitis vinifera), 5'ss of exon 3
GGGTATGTTGGCAACAAATCGGCCGTCTTTCCCCTGCAGCTCCTTGGCTTTGATGTGGATCCAATAAACTCTGTACAGTTTTCTAATCATACAGgtaaa-tgtatatcgtggatgtacacaatctcgtacaattca--cttgggaca-----cataaacaattccagttgtgtgttatctcag-------------------------------------------------------------
|| ||||||||||| |||||||| ||||||||||| ||||| || |||| |||||| |||||||| || || |||||||| || ||||| ||||| ||  ||  |||  |  |   | ||| ||||  |    | |  | ||  | |     |     ||| | |   | | | | |  ||||                                                             
GGATATGTTGGCAATAAATCGGCTGTCTTTCCCCTCCAGCTACTGGGCTATGATGTCGATCCAATCAATTCAGTACAGTTCTCAAATCACACAGgcaagctgcttatacttcactcaaacagtctcagaactctgaagcctgaaatatggtgcgaggtcaactgccaatctatatgagttcaggcatgagatcctagtagcaattgaggttaaattatggttagtcaacttgaatatcttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32800945|gb|CD953181.1|CD953181
EST:     GATCCAATAAACTCTGTACAGTTTTCTAATCATACAG                         GATACCCAACATTTAGAGGTCAGGTTCTTA
genomic: GATCCAATAAACTCTGTACAGTTTTCTAATCATACAGgtaaatgtat ... gttatctcagGATACCCAACATTTAGAGGTCAGGTTCTTA
EST: gi|211131902|gb|FL371916.1|FL371916
EST:     TGGCTTTGATGTGGATCCAATAAACTCTGTACAGTTTTCTAATCATACAG                         GATACCCAACATTTAGAGGTCAGGTTCTTAATGGCAAACAGCTCTGGGACC
genomic: TGGCTTTGATGTGGATCCAATAAACTCTGTACAGTTTTCTAATCATACAGgtaaatgtat ... gttatctcagGATACCCAACATTTAGAGGTCAGGTTCTTAATGGCAAACAGCTCTGGGACC
EST: gi|211278750|gb|FL388232.1|FL388232
EST:     TGGCTTTGATGTGGATCCAATAAACTCTGTACAGTTTTCTAATCATACAG                         GATACCCAACATTTAGAGGTCAGGTTCTTAATGGCAAACAGCTCTGGGACC
genomic: TGGCTTTGATGTGGATCCAATAAACTCTGTACAGTTTTCTAATCATACAGgtaaatgtat ... gttatctcagGATACCCAACATTTAGAGGTCAGGTTCTTAATGGCAAACAGCTCTGGGACC
EST: gi|60397480|gb|DN230296.1|DN230296
EST:     TGGCTTTGATGTGGATCCAATAAACTCTGTACAGTTTTCTAATCATACAG                         GATACCCAACATTTAGAGGTCAGGTTCTTAATGGCAAACAGCTCTGGGACC
genomic: TGGCTTTGATGTGGATCCAATAAACTCTGTACAGTTTTCTAATCATACAGgtaaatgtat ... gttatctcagGATACCCAACATTTAGAGGTCAGGTTCTTAATGGCAAACAGCTCTGGGACC