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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCGGCGGCGTACCCGAAGATGGCGCGGCCGCCGATCCTATCCGTCGCGCTGCCGTCTGACACCGGCCGTGTGCTCAGCATCCAGTCCCACACCGTCCAGgttcagcccgctgccctgaccacctgcgaccatccgtctgtttgctgggttcctgcttgcacgcctcgatgattcaagagcccggactctgcgcctgcct...

Basic information

species Zea mays
transcript GRMZM2G069758_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G069758_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os12g40830.3 (Oryza sativa), 5'ss of exon 2
GGCGGCGGCGTACC-CGAAGATGGCGCGGCCGCCGATCCTATCCGTCGCGCTGCCGTCTGACACCGGCCGTGTGCTCAGCATCCAGTCCCACACCGTCCAGgttcagcccgctgccctgaccacctgcgaccatccgtctgtttgctgggttcctg----cttgcacgcctcga--tgattcaagagcccggactctgcgcctgcct
 ||||||||| |   ||  |||||||||||||||| | || ||||||||||| || || ||||| || || ||||||||||||||||||||||||||||||||||   |  || |||   |    | | |   | |   |  || ||   | | ||    | |  |    ||||   | |||  ||||    | |||| |  |    
-GCGGCGGCGGAGGACGGCGATGGCGCGGCCGCCGGTGCTCTCCGTCGCGCTTCCCTCCGACACGGGACGCGTGCTCAGCATCCAGTCCCACACCGTCCAGgttccttcttcttccccccctcaatcccaatctgctcttcattcctcattccatggaagcgtatatatatcgagtgggttcgggagc---aaatctgaggttc---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211278750|gb|FL388232.1|FL388232
EST:     TGCCGTCTGACACCGGCCGTGTGCTCAGCATCCAGTCCCACACCGTCCAG                         GGGTATGTTGGCAACAAATCGGCCGTCTTTCCCCTGCAGCTCCTTGGCTTT
genomic: TGCCGTCTGACACCGGCCGTGTGCTCAGCATCCAGTCCCACACCGTCCAGgttcagcccg ... tccaattcagGGGTATGTTGGCAACAAATCGGCCGTCTTTCCCCTGCAGCTCCTTGGCTTT
EST: gi|86471052|gb|DY237422.1|DY237422
EST:     TGCCGTCTGACACCGGCCGTGTGCTCAGCATCCAGTCCCACACCGTCCAG                         GGGTATGTTGGCAACAAATCGGCCGTCTTTCCCCTGCAGCTCCTTGGCTTT
genomic: TGCCGTCTGACACCGGCCGTGTGCTCAGCATCCAGTCCCACACCGTCCAGgttcagcccg ... tccaattcagGGGTATGTTGGCAACAAATCGGCCGTCTTTCCCCTGCAGCTCCTTGGCTTT