1 5' 3' | 2 5' 3' | 3 5' 3' |
CGACTACTGCGTCAAGGACTGCGGTGTCATCTCTACGCCGGAGGTGACGCAGAAGAGGATCAGCAGCAGTGACCAATTTATCATCCTCGCTACCGACGGGgtagctttcggcctatctgcctttaattctctatgcaaacacaggcacatgcacccatcttttcgtttaagaaagcatacacattgcttggtgactgacgatggcaaacgggaattttatccgatag
species | Zea mays |
transcript | GRMZM2G069713_T02 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGAAGAGGATCAGCAGCAGTGACCAATTTATCATCCTCGCTACCGACGGG GTATGGGACGTGCTCTCCAACGACGAGGCGGTACATATCGTGGCGGGGACGEST: gi|149087973|gb|EE287216.2|EE287216
genomic: AGAAGAGGATCAGCAGCAGTGACCAATTTATCATCCTCGCTACCGACGGGgtagctttcg ... tatccgatagGTATGGGACGTGCTCTCCAACGACGAGGCGGTACATATCGTGGCGGGGACG
EST: AGAAGAGGATCAGCAGCAGTGACCAATTTATCATCCTCGCTACCGACGGG GTATGGGACGTGCTCTCCAACGACGAGGCGGTACATATCGTGGCGGGGACGEST: gi|78110759|gb|DV529157.1|DV529157
genomic: AGAAGAGGATCAGCAGCAGTGACCAATTTATCATCCTCGCTACCGACGGGgtagctttcg ... tatccgatagGTATGGGACGTGCTCTCCAACGACGAGGCGGTACATATCGTGGCGGGGACG
EST: AGAAGAGGATCAGCAGCAGTGACCAATTTATCATCCTCGCTACCGACGGG GTATGGGACGTGCTCTCCAACGACGAGGCGGTACATATCGTGGCGGGGACGEST: gi|148976022|gb|EE025881.2|EE025881
genomic: AGAAGAGGATCAGCAGCAGTGACCAATTTATCATCCTCGCTACCGACGGGgtagctttcg ... tatccgatagGTATGGGACGTGCTCTCCAACGACGAGGCGGTACATATCGTGGCGGGGACG
EST: AGAAGAGGATCAGCAGCAGTGACCAATTTATCATCCTCGCTACCGACGGG GTATGGGACGTGCTCTCCAACGACGAGGCGGTACATATCGTGGCGGGGACGEST: gi|86474250|gb|DY240620.1|DY240620
genomic: AGAAGAGGATCAGCAGCAGTGACCAATTTATCATCCTCGCTACCGACGGGgtagctttcg ... tatccgatagGTATGGGACGTGCTCTCCAACGACGAGGCGGTACATATCGTGGCGGGGACG
EST: AGAAGAGGATCAGCAGCAGTGACCAATTTATCATCCTCGCTACCGACGGG GTATGGGACGTGCTCTCCAACGACGAGGCGGTACATATCGTGGCGGGGACGEST: gi|50325661|gb|CO520787.1|CO520787
genomic: AGAAGAGGATCAGCAGCAGTGACCAATTTATCATCCTCGCTACCGACGGGgtagctttcg ... tatccgatagGTATGGGACGTGCTCTCCAACGACGAGGCGGTACATATCGTGGCGGGGACG
EST: AGAAGAGGATCAGCAGCAGTGACCAATTTATCATCCTCGCTACCGACGGG GTATGGGACGTGCTCTCCAACGACGAGGCGGTACATATCGTGGCGGGGACGEST: gi|148935756|gb|EC879800.2|EC879800
genomic: AGAAGAGGATCAGCAGCAGTGACCAATTTATCATCCTCGCTACCGACGGGgtagctttcg ... tatccgatagGTATGGGACGTGCTCTCCAACGACGAGGCGGTACATATCGTGGCGGGGACG
EST: GATCAGCAGCAGTGACCAATTTATCATCCTCGCTACCGACGGG GTATGGGACGTGCTCTCCAACGACGAGGCGGTACATATCGTGGCGGGGACGEST: gi|149104582|gb|EE290033.2|EE290033
genomic: GATCAGCAGCAGTGACCAATTTATCATCCTCGCTACCGACGGGgtagctttcg ... tatccgatagGTATGGGACGTGCTCTCCAACGACGAGGCGGTACATATCGTGGCGGGGACG
EST: AAGAGGATCAGCAGCAGTGACCAATTTATCATCCTCGCTCCCGACGGG GTATGGGACGTGCTCTCCAACGACGAGGCGGTACATATCGTGGCGGGGACGEST: gi|148945978|gb|EC891272.2|EC891272
genomic: AAGAGGATCAGCAGCAGTGACCAATTTATCATCCTCGCTACCGACGGGgtagctttcg ... tatccgatagGTATGGGACGTGCTCTCCAACGACGAGGCGGTACATATCGTGGCGGGGACG
EST: AGAAGAGGATCAGCAGCAGTGACCAATTTATCATCCTCGCTACCGACGGG GTATGGGACGTGCTCTCCAACGACGAGGCGGTACATATCGTGGCGGGGACGEST: gi|78087334|gb|DV515727.1|DV515727
genomic: AGAAGAGGATCAGCAGCAGTGACCAATTTATCATCCTCGCTACCGACGGGgtagctttcg ... tatccgatagGTATGGGACGTGCTCTCCAACGACGAGGCGGTACATATCGTGGCGGGGACG
EST: AGAAGAGGATCAGCAGCAGTGACCAATTTATCATCCTCGCTACCGACGGG GTATGGGACGTGCTCTCCAACGACGAGGCGGTACATATCGTGGCGGGGACGEST: gi|74246502|gb|DT654416.1|DT654416
genomic: AGAAGAGGATCAGCAGCAGTGACCAATTTATCATCCTCGCTACCGACGGGgtagctttcg ... tatccgatagGTATGGGACGTGCTCTCCAACGACGAGGCGGTACATATCGTGGCGGGGACG
EST: AGAAGAGGATCAGCAGCAGTGACCAATTTATCATCCTCGCTACCGACGGG GTATGGGACGTGCTCTCCAACGACGAGGCGGTACATATCGTGGCGGGGACGEST: gi|91878208|gb|EB408165.1|EB408165
genomic: AGAAGAGGATCAGCAGCAGTGACCAATTTATCATCCTCGCTACCGACGGGgtagctttcg ... tatccgatagGTATGGGACGTGCTCTCCAACGACGAGGCGGTACATATCGTGGCGGGGACG
EST: AGAAGAGGATCAGCAGCAGTGACCAATTTATCATCCTCGCTACCGACGGG GTATGGGACGTGCTCTCCAACGACGAGGCGGTACATATCGTGGCGGGGACGEST: gi|50329314|gb|CO524440.1|CO524440
genomic: AGAAGAGGATCAGCAGCAGTGACCAATTTATCATCCTCGCTACCGACGGGgtagctttcg ... tatccgatagGTATGGGACGTGCTCTCCAACGACGAGGCGGTACATATCGTGGCGGGGACG
EST: AGAAGAGGATCAGCAGCAGTGACCAATTTATCATCCTCGCTACCGACGGG GTATGGGACGTGCTCTCCAACGACGAGGCGGTACATATCGTGGCGGGGACG
genomic: AGAAGAGGATCAGCAGCAGTGACCAATTTATCATCCTCGCTACCGACGGGgtagctttcg ... tatccgatagGTATGGGACGTGCTCTCCAACGACGAGGCGGTACATATCGTGGCGGGGACG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGACTACTGCGTCAAGGACTGCGGTGTCATCTCTACGCCGGAGGTGACGCAGAAGAGGATCAGCAGCAGTGACCAATTTATCATCCTCGCTACCGACGGGgtagctttcggcctatctgcctttaattctctatgcaaacacaggcacatgcacccatcttttcgtttaagaaagcatacacattgcttggtgactgacgatggcaaacgggaattttatccgatag
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT