Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGCCGCTGATGCTCGCGGCGATGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAATgtgagcggaaatctcctcctcctcttcttcttccgagcgagtacgagtgaccagctacaaacaactaaccgcttcgctgtccgatctgtgcctgccag

Basic information

species Zea mays
transcript GRMZM2G069162_T03
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G069162_T03 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os05g02130.1 (Oryza sativa), 5'ss of exon 3
ACGCCGCTGATGCTCGCGGCGATGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAATgtgagcggaaatctcctcctcctcttcttcttccgagcgagtacgagtgaccagct---acaaacaactaaccgcttcgctgtccgatctgtgcctgccag
|||||||||||||||||||| ||||||||||||| |||||||||||| |||||||| ||||||| ||| |||||||| | |||   |  |    ||    |  |   |   | |         | | |   | |||  | |||| | | || | ||  | | |          
ACGCCGCTGATGCTCGCGGCCATGCACGGCAAGATCGACTGCGTGCTCAAGCTCCTCCAGGCCGACGCAAATgtgagagaaaagaactgcaaaatcagtatactgataat-actgtagtaattctgtttgaaaaaatcagtaacagttacgatttcgcaccag----------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149010154|gb|EE041967.2|EE041967
EST:     TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAAT                         ATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
genomic: TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAATgtgagcggaa ... tgcctgccagATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
EST: gi|148932463|gb|EC876197.2|EC876197
EST:     TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAAT                         ATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
genomic: TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAATgtgagcggaa ... tgcctgccagATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
EST: gi|91876743|gb|EB406700.1|EB406700
EST:     TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAAT                         ATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
genomic: TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAATgtgagcggaa ... tgcctgccagATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
EST: gi|211326970|gb|FL003075.1|FL003075
EST:     TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAAT                         ATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
genomic: TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAATgtgagcggaa ... tgcctgccagATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
EST: gi|50325257|gb|CO520383.1|CO520383
EST:     TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAAT                         ATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
genomic: TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAATgtgagcggaa ... tgcctgccagATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
EST: gi|74232733|gb|DT640647.1|DT640647
EST:     TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAAT                         ATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
genomic: TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAATgtgagcggaa ... tgcctgccagATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
EST: gi|78089777|gb|DV518151.1|DV518151
EST:     TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAAT                         ATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
genomic: TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAATgtgagcggaa ... tgcctgccagATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
EST: gi|71449909|gb|DR830959.1|DR830959
EST:     TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAAT                         ATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
genomic: TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAATgtgagcggaa ... tgcctgccagATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
EST: gi|91049871|gb|EB160289.1|EB160289
EST:     TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAAT                         ATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
genomic: TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAATgtgagcggaa ... tgcctgccagATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
EST: gi|148938650|gb|EC882982.2|EC882982
EST:     TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAAT                         ATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
genomic: TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAATgtgagcggaa ... tgcctgccagATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
EST: gi|71313857|gb|DR793525.1|DR793525
EST:     TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAAT                         ATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
genomic: TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAATgtgagcggaa ... tgcctgccagATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
EST: gi|149112247|gb|EE295151.2|EE295151
EST:     TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAAT                         ATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
genomic: TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAATgtgagcggaa ... tgcctgccagATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
EST: gi|76913183|gb|DV165033.1|DV165033
EST:     TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAAT                         ATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
genomic: TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAATgtgagcggaa ... tgcctgccagATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
EST: gi|149085044|gb|EE174553.2|EE174553
EST:     TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAAT                         ATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
genomic: TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAATgtgagcggaa ... tgcctgccagATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
EST: gi|71320952|gb|DR797192.1|DR797192
EST:     TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAAT                         ATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
genomic: TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAATgtgagcggaa ... tgcctgccagATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
EST: gi|148967178|gb|EE018364.2|EE018364
EST:     TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAAT                         ATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
genomic: TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAATgtgagcggaa ... tgcctgccagATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
EST: gi|71432311|gb|DR813361.1|DR813361
EST:     TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAAT                         ATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
genomic: TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAATgtgagcggaa ... tgcctgccagATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
EST: gi|50328517|gb|CO523643.1|CO523643
EST:     TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAAT                         ATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
genomic: TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAATgtgagcggaa ... tgcctgccagATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
EST: gi|76014676|gb|DT941846.1|DT941846
EST:     TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAAT                         ATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
genomic: TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAATgtgagcggaa ... tgcctgccagATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
EST: gi|71449368|gb|DR830418.1|DR830418
EST:     TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAAT                         ATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
genomic: TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAATgtgagcggaa ... tgcctgccagATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
EST: gi|78081585|gb|DV509997.1|DV509997
EST:     TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAAT                         ATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
genomic: TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAATgtgagcggaa ... tgcctgccagATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
EST: gi|148982737|gb|EE028556.2|EE028556
EST:     TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAAT                         ATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
genomic: TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAATgtgagcggaa ... tgcctgccagATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
EST: gi|50335142|gb|CO530268.1|CO530268
EST:     TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAAT                         ATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
genomic: TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAATgtgagcggaa ... tgcctgccagATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
EST: gi|149071938|gb|EE160325.2|EE160325
EST:     TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAAT                         ATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
genomic: TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAATgtgagcggaa ... tgcctgccagATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
EST: gi|149037744|gb|EE155406.2|EE155406
EST:     TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAAT                         ATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
genomic: TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAATgtgagcggaa ... tgcctgccagATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
EST: gi|71768259|gb|DR966196.1|DR966196
EST:     TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAAT                         ATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
genomic: TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAATgtgagcggaa ... tgcctgccagATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
EST: gi|78080357|gb|DV508769.1|DV508769
EST:     TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAAT                         ATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
genomic: TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAATgtgagcggaa ... tgcctgccagATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
EST: gi|148949274|gb|EC894718.2|EC894718
EST:     TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAAT                         ATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
genomic: TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAATgtgagcggaa ... tgcctgccagATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
EST: gi|76013282|gb|DT940452.1|DT940452
EST:     TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGTCCGGCGCCAAT                         ATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
genomic: TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAATgtgagcggaa ... tgcctgccagATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
EST: gi|148953967|gb|EC899355.2|EC899355
EST:     TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAAT                         ATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
genomic: TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAATgtgagcggaa ... tgcctgccagATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
EST: gi|148945991|gb|EC891286.2|EC891286
EST:     TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAAT                         ATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
genomic: TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAATgtgagcggaa ... tgcctgccagATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
EST: gi|67014789|gb|CO443538.1|CO443538
EST:     TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAAT                         ATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
genomic: TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAATgtgagcggaa ... tgcctgccagATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
EST: gi|93283971|gb|EB676235.1|EB676235
EST:     TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAAT                         ATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
genomic: TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAATgtgagcggaa ... tgcctgccagATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
EST: gi|33466680|gb|CF243729.1|CF243729
EST:     TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAAT                         ATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
genomic: TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAATgtgagcggaa ... tgcctgccagATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
EST: gi|94472164|gb|EB701122.1|EB701122
EST:     TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAAT                         ATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
genomic: TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAATgtgagcggaa ... tgcctgccagATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
EST: gi|149078678|gb|EE167469.2|EE167469
EST:     TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAAT                         ATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
genomic: TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAATgtgagcggaa ... tgcctgccagATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
EST: gi|71423338|gb|DR806006.1|DR806006
EST:     TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAAT                         ATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
genomic: TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAATgtgagcggaa ... tgcctgccagATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
EST: gi|149111573|gb|EE190708.2|EE190708
EST:     TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAAT                         ATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
genomic: TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAATgtgagcggaa ... tgcctgccagATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
EST: gi|148951595|gb|EC897330.2|EC897330
EST:     TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAAT                         ATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
genomic: TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAATgtgagcggaa ... tgcctgccagATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
EST: gi|76284670|gb|DV024238.1|DV024238
EST:     TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAAT                         ATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
genomic: TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAATgtgagcggaa ... tgcctgccagATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
EST: gi|94472171|gb|EB701129.1|EB701129
EST:     TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAAT                         ATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
genomic: TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAATgtgagcggaa ... tgcctgccagATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
EST: gi|148952353|gb|EC898166.2|EC898166
EST:     TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAAT                         ATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
genomic: TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAATgtgagcggaa ... tgcctgccagATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
EST: gi|71772502|gb|DR970434.1|DR970434
EST:     TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAAT                         ATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
genomic: TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAATgtgagcggaa ... tgcctgccagATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
EST: gi|76010938|gb|DT938108.1|DT938108
EST:     TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAAT                         ATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
genomic: TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAATgtgagcggaa ... tgcctgccagATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
EST: gi|91054246|gb|EB164664.1|EB164664
EST:     TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAAT                         ATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
genomic: TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAATgtgagcggaa ... tgcctgccagATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
EST: gi|149096259|gb|EE181967.2|EE181967
EST:     TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAAT                         ATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
genomic: TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAATgtgagcggaa ... tgcctgccagATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
EST: gi|91054647|gb|EB165065.1|EB165065
EST:     TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAAT                         ATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
genomic: TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAATgtgagcggaa ... tgcctgccagATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
EST: gi|50323631|gb|CO518757.1|CO518757
EST:     TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAAT                         ATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
genomic: TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAATgtgagcggaa ... tgcctgccagATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
EST: gi|148987274|gb|EE031110.2|EE031110
EST:     TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAAT                         ATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
genomic: TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAATgtgagcggaa ... tgcctgccagATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
EST: gi|71304552|gb|DR788396.1|DR788396
EST:     TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAAT                         ATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
genomic: TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAATgtgagcggaa ... tgcctgccagATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
EST: gi|149085919|gb|EE175447.2|EE175447
EST:     TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAAT                         ATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
genomic: TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAATgtgagcggaa ... tgcctgccagATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
EST: gi|148982960|gb|EE028846.2|EE028846
EST:     TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAAT                         ATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
genomic: TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAATgtgagcggaa ... tgcctgccagATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
EST: gi|71438367|gb|DR819417.1|DR819417
EST:     TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAAT                         ATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
genomic: TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAATgtgagcggaa ... tgcctgccagATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
EST: gi|149113145|gb|EE295904.2|EE295904
EST:     TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAAT                         ATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
genomic: TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAATgtgagcggaa ... tgcctgccagATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
EST: gi|211331298|gb|FL003101.1|FL003101
EST:     TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAAT                         ATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
genomic: TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAATgtgagcggaa ... tgcctgccagATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
EST: gi|149070411|gb|EE158812.2|EE158812
EST:     TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAAT                         ATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
genomic: TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAATgtgagcggaa ... tgcctgccagATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
EST: gi|101388700|gb|EB816333.1|EB816333
EST:     TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAAT                         ATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
genomic: TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAATgtgagcggaa ... tgcctgccagATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
EST: gi|71764076|gb|DR962013.1|DR962013
EST:     TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAAT                         ATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
genomic: TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAATgtgagcggaa ... tgcctgccagATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
EST: gi|89761791|gb|DY689663.1|DY689663
EST:     TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAAT                         ATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
genomic: TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAATgtgagcggaa ... tgcctgccagATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
EST: gi|148995650|gb|EE034862.2|EE034862
EST:     TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAAT                         ATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
genomic: TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAATgtgagcggaa ... tgcctgccagATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
EST: gi|91873603|gb|EB403560.1|EB403560
EST:     TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAAT                         ATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
genomic: TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAATgtgagcggaa ... tgcctgccagATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
EST: gi|148966812|gb|EE017914.2|EE017914
EST:     TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAAT                         ATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
genomic: TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAATgtgagcggaa ... tgcctgccagATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
EST: gi|148948691|gb|EC898606.2|EC898606
EST:     TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAAT                         ATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC
genomic: TGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAATgtgagcggaa ... tgcctgccagATCCTCATGTTCGACTCCCAGCACGGGCGGACCTGCCTGCACCACGCGTCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACGCCGCTGATGCTCGCGGCGATGCACGGCAAGACCGACTGCGTGCTGAAGCTCCTGCAGGCCGGCGCCAATgtgagcggaaatctcctcctcctcttcttcttccgagcgagtacgagtgaccagctacaaacaactaaccgcttcgctgtccgatctgtgcctgccag

- - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - -  CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG