1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GTTAATGGAGTTGGAAAGACCGCAGTTACAGTGGAGTACCCAGAGCGTCCTGGACAGCCTCTCTGTGAGgtaaataaaccaattctaaagctatttctgattgatattttaggtccaaatgtattatattttgttgtcatgtggtggaaactctggttacgaatgttcttgttattttcag
species | Zea mays |
transcript | GRMZM2G069009_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CCGCAGTTACAGTGGAGTACCCAGAGCGTCCTGGACAGCCTCTCTGTGAG TACTATGCAAAGAATGGCACCTGTAAATTTGGTTCCAATTGCAAGTTTGATEST: gi|94476471|gb|EB705429.1|EB705429
genomic: CCGCAGTTACAGTGGAGTACCCAGAGCGTCCTGGACAGCCTCTCTGTGAGgtaaataaac ... ttattttcagTACTATGCAAAGAATGGCACCTGTAAATTTGGTTCCAATTGCAAGTTTGAT
EST: CCGCAGTTACAGTGGAGTACCCAGAGCGTCCTGGACAGCCTCTCTGTGAG TACTATGCAAAGAATGGCACCTGTAAATTTGGTTCCAATTGCAAGTTTGATEST: gi|149005039|gb|EE039564.2|EE039564
genomic: CCGCAGTTACAGTGGAGTACCCAGAGCGTCCTGGACAGCCTCTCTGTGAGgtaaataaac ... ttattttcagTACTATGCAAAGAATGGCACCTGTAAATTTGGTTCCAATTGCAAGTTTGAT
EST: CCGCAGTTACAGTGGAGTACCCAGAGCGTCCTGGACAGCCTCTCTGTGAG TACTATGCAAAGAATGGCACCTGTAAATTTGGTTCCAATTGCAAGTTTGATEST: gi|91049855|gb|EB160273.1|EB160273
genomic: CCGCAGTTACAGTGGAGTACCCAGAGCGTCCTGGACAGCCTCTCTGTGAGgtaaataaac ... ttattttcagTACTATGCAAAGAATGGCACCTGTAAATTTGGTTCCAATTGCAAGTTTGAT
EST: CCGCAGTTACAGTGGAGTACCCAGAGCGTCCTGGACAGCCTCTCTGTGAG TACTATGCAAAGAATGGCACCTGTAAATTTGGTTCCAATTGCAAGTTTGATEST: gi|148956932|gb|EC902865.2|EC902865
genomic: CCGCAGTTACAGTGGAGTACCCAGAGCGTCCTGGACAGCCTCTCTGTGAGgtaaataaac ... ttattttcagTACTATGCAAAGAATGGCACCTGTAAATTTGGTTCCAATTGCAAGTTTGAT
EST: CCGCAGTTACAGTGGAGTACCCAGAGCGTCCTGGACAGCCTCTCTGTGAG TACTATGCAAAGAATGGCACCTGTAAATTTGGTTCCAATTGCAAGTTTGATEST: gi|149094715|gb|EE180267.2|EE180267
genomic: CCGCAGTTACAGTGGAGTACCCAGAGCGTCCTGGACAGCCTCTCTGTGAGgtaaataaac ... ttattttcagTACTATGCAAAGAATGGCACCTGTAAATTTGGTTCCAATTGCAAGTTTGAT
EST: CCGCAGTTACAGTGGAGTACCCAGAGCGTCCTGGACAGCCTCTCTGTGAG TACTATGCAAAGAATGGCACCTGTAAATTTGGTTCCAATTGCAAGTTTGATEST: gi|78082860|gb|DV511253.1|DV511253
genomic: CCGCAGTTACAGTGGAGTACCCAGAGCGTCCTGGACAGCCTCTCTGTGAGgtaaataaac ... ttattttcagTACTATGCAAAGAATGGCACCTGTAAATTTGGTTCCAATTGCAAGTTTGAT
EST: CCGCAGTTACAGTGGAGTACCCAGAGCGTCCTGGACAGCCTCTCTGTGAG TACTATGCAAAGAATGGGACCTGTAAATTTGGTTCCAATTGCAAGTTTGATEST: gi|71418361|gb|DR804412.1|DR804412
genomic: CCGCAGTTACAGTGGAGTACCCAGAGCGTCCTGGACAGCCTCTCTGTGAGgtaaataaac ... ttattttcagTACTATGCAAAGAATGGCACCTGTAAATTTGGTTCCAATTGCAAGTTTGAT
EST: CCGCAGTTACAGTGGAGTACCCAGAGCGTCCTGGACAGCCTCTCTGTGAG TACTATGCAAAGAATGGCACCTGTAAATTTGGTTCCAATTGCAAGTTTGATEST: gi|76937022|gb|DV175010.1|DV175010
genomic: CCGCAGTTACAGTGGAGTACCCAGAGCGTCCTGGACAGCCTCTCTGTGAGgtaaataaac ... ttattttcagTACTATGCAAAGAATGGCACCTGTAAATTTGGTTCCAATTGCAAGTTTGAT
EST: CCGCAGTTACAGTGGAGTACCCAGAGCGTCCTGGACAGCCTCTCTGTGAG TACTATGCAAAGAATGGCACCTGTAAATTTGGTTCCAATTGCAAGTTTGATEST: gi|74232341|gb|DT640255.1|DT640255
genomic: CCGCAGTTACAGTGGAGTACCCAGAGCGTCCTGGACAGCCTCTCTGTGAGgtaaataaac ... ttattttcagTACTATGCAAAGAATGGCACCTGTAAATTTGGTTCCAATTGCAAGTTTGAT
EST: CCGCAGTTACAGTGGAGTACCCAGAGCGTCCTGGACAGCCTCTCTGTGAG TACTATGCAAAGAATGGCACCTGTAAATTTGGTTCCAATTGCAAGTTTGATEST: gi|149087101|gb|EE176640.2|EE176640
genomic: CCGCAGTTACAGTGGAGTACCCAGAGCGTCCTGGACAGCCTCTCTGTGAGgtaaataaac ... ttattttcagTACTATGCAAAGAATGGCACCTGTAAATTTGGTTCCAATTGCAAGTTTGAT
EST: CCGCAGTTACAGTGGAGTACCCAGAGCGTCCTGGACAGCCTCTCTGTGAG TACTATGCAAAGAATGGCACCTGTAAATTTGGTTCCAATTGCAAGTTTGATEST: gi|76286604|gb|DV026172.1|DV026172
genomic: CCGCAGTTACAGTGGAGTACCCAGAGCGTCCTGGACAGCCTCTCTGTGAGgtaaataaac ... ttattttcagTACTATGCAAAGAATGGCACCTGTAAATTTGGTTCCAATTGCAAGTTTGAT
EST: CCGCAGTTACAGTGGAGTACCCAGAGCGTCCTGGACAGCCTCTCTGTGAG TACTATGCAAAGAATGGCACCTGTAAATTTGGTTCCAATTGCAAGTTTGATEST: gi|149102933|gb|EE288285.2|EE288285
genomic: CCGCAGTTACAGTGGAGTACCCAGAGCGTCCTGGACAGCCTCTCTGTGAGgtaaataaac ... ttattttcagTACTATGCAAAGAATGGCACCTGTAAATTTGGTTCCAATTGCAAGTTTGAT
EST: CCGCAGTTACAGTGGAGTACCCAGAGCGTCCTGGACAGCCTCTCTGTGAG TACTATGCAAAGAATEST: gi|78114960|gb|DV533348.1|DV533348
genomic: CCGCAGTTACAGTGGAGTACCCAGAGCGTCCTGGACAGCCTCTCTGTGAGgtaaataaac ... ttattttcagTACTATGCAAAGAAT
EST: CCGCAGTTACAGTGGAGTACCCAGAGCGTCCTGGACAGCCTCTCTGTGAG TACTATGCAAAGAATGGCACCTGTAAATTTGGTTCCAATTGCAAGTTTGAT
genomic: CCGCAGTTACAGTGGAGTACCCAGAGCGTCCTGGACAGCCTCTCTGTGAGgtaaataaac ... ttattttcagTACTATGCAAAGAATGGCACCTGTAAATTTGGTTCCAATTGCAAGTTTGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTAATGGAGTTGGAAAGACCGCAGTTACAGTGGAGTACCCAGAGCGTCCTGGACAGCCTCTCTGTGAGgtaaataaaccaattctaaagctatttctgattgatattttaggtccaaatgtattatattttgttgtcatgtggtggaaactctggttacgaatgttcttgttattttcag
- - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - GTGGAG