1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
AATCGTGGCCAAGTGCCTCACTGGCCGACCAAAGACTGTCGAGAAAGCTCAAGCTGCATTCCTCCTATGGGTGGAACTGGAGGCATCAGAGGTCTTCCTTgtaagttgatcatcaatcccctgattgttatgattgtgagctgttggtgaaatgcatgtgcatacataatgctacttttttgttcacttggttttcacaa...
species | Zea mays |
transcript | GRMZM2G068755_T02 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AAGCTGCATTCCTCCTATGGGTGGAACTGGAGGCATCAGAGGTCTTCCTT GAAGCTATGGAGAAGGCTGTGAAGAACAAAGTGGCTAAAGCAGTTGTACCTEST: gi|211192783|gb|FL428804.1|FL428804
genomic: AAGCTGCATTCCTCCTATGGGTGGAACTGGAGGCATCAGAGGTCTTCCTTgtaagttgat ... gtggcatcagGAAGCTATGGAGAAGGCTGTGAAGAACAAAGTGGCTAAAGCAGTTGTACCT
EST: AAGCTGCATTCCTCCTATGGGTGGAACTGGAGGCATCAGAGGTCTTCCTT GAAGCTATGGAGAAGGCTGTGAAGAACAAAATGGCTAAAGCAGTTGTACCTEST: gi|18963449|gb|BM660441.1|BM660441
genomic: AAGCTGCATTCCTCCTATGGGTGGAACTGGAGGCATCAGAGGTCTTCCTTgtaagttgat ... gtggcatcagGAAGCTATGGAGAAGGCTGTGAAGAACAAAGTGGCTAAAGCAGTTGTACCT
EST: AAGCTGCATTCCTCCTATGGGTGGAACTGGAGGCATCAGAGGTCTTCCTT GAAGCTATGGAGAAGEST: gi|87152945|gb|DY397734.1|DY397734
genomic: AAGCTGCATTCCTCCTATGGGTGGAACTGGAGGCATCAGAGGTCTTCCTTgtaagttgat ... gtggcatcagGAAGCTATGGAGAAG
EST: AAGCTGCATTCCTCCTATGGGTGGAACTGGAGGCATCAGAGGTCTTCCTT GAAGCTATGGAGAAGGCTGTGAAGAACAAAGTGGCTAAAGCAGTTGTACCTEST: gi|30591281|gb|CD052294.1|CD052294
genomic: AAGCTGCATTCCTCCTATGGGTGGAACTGGAGGCATCAGAGGTCTTCCTTgtaagttgat ... gtggcatcagGAAGCTATGGAGAAGGCTGTGAAGAACAAAGTGGCTAAAGCAGTTGTACCT
EST: AAGCTGCATTCCTCCTGTGGGTGGAACTGGAGGCAGCAGAGGTCTTCCTT GAATCTATGGAGAAGGCTGTGAAGAACAAAGTGGCTAAAGCAGTTGTACCT
genomic: AAGCTGCATTCCTCCTATGGGTGGAACTGGAGGCATCAGAGGTCTTCCTTgtaagttgat ... gtggcatcagGAAGCTATGGAGAAGGCTGTGAAGAACAAAGTGGCTAAAGCAGTTGTACCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATCGTGGCCAAGTGCCTCACTGGCCGACCAAAGACTGTCGAGAAAGCTCAAGCTGCATTCCTCCTATGGGTGGAACTGGAGGCATCAGAGGTCTTCCTTgtaagttgatcatcaatcccctgattgttatgattgtgagctgttggtgaaatgcatgtgcatacataatgctacttttttgttcacttggttttcacaa
- - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG