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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGTACCGACCACCTCGATGCTCACACTGTTCCATTTGCAATAACTGTGTGGAACGGTTTGATCATCACTGTCCATGGGTCGGCCAGTGCATAGGACTGgtaagttacacaagattactaggtgtttcataggcgtcctcatattacttgaattgatatttagagctactatttctgggtacattttttttgaatgttgactaactttctattttgttaagactgaccatcaatgtatttgtgcag

Basic information

species Zea mays
transcript GRMZM2G068657_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G068657_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os08g42370.3 (Oryza sativa), 5'ss of exon 3
GTTGTACCGACCACCTCGATGCTCACACTGTTCCATTTGCAATAACTGTGTGGAACGGTTTGATCATCACTGTCCATGGGTCGGCCAGTGCATAGGACTGgtaagttacacaagattactaggtgtttcataggcgtcctcatattacttgaattgatatttagagctactatttctgggtacattttttttgaatgttgactaactttct----attttgttaagactgaccatcaa-tgtatttg-tgcag
| | ||||| ||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||  ||     || | ||  |||   ||    |||| |   ||   | |  || || | | |    | |||   | ||   ||    ||  | |     | || |||    ||    || || || | ||| ||   |||||| |||||
GCTTTACCGGCCACCTCGATGCTCACACTGTTCGATATGCAACAACTGTGTGGAACGGTTTGATCATCACTGTCCATGGGTTGGCCAATGCATAGGACTTgtaagtatcatgttttt-ccagcagttctgtacctatccttaccgta---ggaaagacatgt-gcgtatttgtttggagttattcttccagtgcttttcattgagctctcttcaaatcaacttgagcctaatcataaagcatatttggtgcag

upper sequence: GRMZM2G068657_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA16G05670.2 (Glycine max), 5'ss of exon 3
GTTGTACCGACCACCTCGATGCTCACACTGTTCCATTTGCAATAACTGTGTGGAACGGTTTGATCATCACTGTCCATGGGTCGGCCAGTGCATAGGACTGgtaagttacacaagattactaggtgtttcataggcgtcctcatattacttgaattgatatttagagctactatttctgggtacattttttttgaatgt-tgactaactttctattttgttaagactgaccatcaatgtatttgtgcag
| | ||| | || ||||||||||| ||||| || || || ||||||||||||||||||||||| ||||||||||| ||||| || ||||| || || |||||| |||      |||   |   ||| || |  | ||  |  ||||  ||   |   | | |      | | |||  ||| |    |   || |     |   ||| |                                        
GCTCTACAGGCCTCCTCGATGCTCGCACTGCTCAATCTGTAATAACTGTGTGGAACGGTTTGACCATCACTGTCCTTGGGTTGGGCAGTGTATTGGGCTGgtatgttg-----gatcttt---tgtctcttgagtgttattttattctttttttctttttgtgtgaagaatgttttgggggaagagtagcttaaccccattgttaagt----------------------------------------

upper sequence: GRMZM2G068657_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA19G27160.1 (Glycine max), 5'ss of exon 3
GTTGTACCGACCACCTCGATGCTCACACTGTTCCATTTGCAATAACTGTGTGGAACGGTTTGATCATCACTGTCCATGGGTCGGCCAGTGCATAGGACTGgtaagttacacaagat---tactaggtgtttcataggcgtcctcatattacttgaattgatatttagagctactatttctgggtacattttttttgaatgttgactaactttctattttgttaagactgaccatcaatgtatttgtgcag
| | ||| | || ||||||||||| ||||| || || || ||||||||||||||||||||||||||||||||||| ||||| || ||||| || || ||||||||||  |    ||   | | | |||||   |     | ||  | |   ||    ||| |||| | |  |   | |||   | |  ||   |   |    ||                                              
GCTCTACAGGCCTCCTCGATGCTCGCACTGCTCAATCTGTAATAACTGTGTGGAACGGTTTGATCATCACTGTCCTTGGGTTGGGCAGTGTATTGGGCTGgtaagttggatcttatatctcccaagtgttattt---tattcttttttctttttgtgtga-atttgggggaagagtatcttaatcccattaagtgtgacagaga----------------------------------------------

upper sequence: GRMZM2G068657_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA16G26140.2 (Glycine max), 5'ss of exon 3
GTTGTACCGACCACCTCGATGCTCACACTGTTCCATTTGCAATAACTGTGTGGAACGGTTTGATCATCACTGTCCATGGGTCGGCCAGTGCATAGGACTGgtaagttacacaagattactaggtgtttcataggcgtcctcatattacttgaat-tgatatttagagctactatttctgggtacattttttttgaatgttgactaactttctattttgttaagactgaccatcaatgtatttgtgcag
| | ||| | || |||||||| || ||||| || ||||| |||||||||||||||||||||||||| || ||||| ||||| || |||||||| || |||||||||||     ||    |   ||||| | |    |  |  | ||| |||| | |||| |  |||  | |   | || || | |         ||   || ||   | |||    ||                              
GCTCTACAGGCCTCCTCGATGTTCTCACTGCTCAATTTGTAATAACTGTGTGGAACGGTTTGATCACCATTGTCCCTGGGTTGGGCAGTGCATTGGGCTGgtaagtta-----gaccttt---tgtttgacaaaattgat--ttttaattgagtctgatctgcagaatttcctctgctaggcaga---------aagactggcttggtatctggggtga-----------------------------

upper sequence: GRMZM2G068657_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA02G07190.1 (Glycine max), 5'ss of exon 3
GTTGTACCGACCACCTCGATGCTCACACTGTTCCATTTGCAATAACTGTGTGGAACGGTTTGATCATCACTGTCCATGGGTCGGCCAGTGCATAGGACTGgtaagttacacaagattactaggtgtttcataggcgtcctcatattacttgaattgatatttagagctactatttctgggtacattttttttgaatgttgactaactttctattttgttaagactgaccatcaatgtatttgtgcag
| | ||| | || |||||||| || ||||| || ||||| |||||||||||||||||||||||||| || ||||| ||||| || |||||||| || ||||||||||| ||        |  || |  || |   |   |   |||  |  |  || | |  |||  | | | | || || | |         ||   ||||    | |||    |                               
GCTCTACAGGCCTCCTCGATGTTCTCACTGCTCAATTTGTAATAACTGTGTGGAACGGTTTGATCACCATTGTCCCTGGGTTGGGCAGTGCATTGGGCTGgtaagttagacc------ttttgtttgacaaaattgatttttaattg-tgaatctgctctgcagaatttccaatgctaggcaga---------aagactgacacggtatctggggt-------------------------------

upper sequence: GRMZM2G068657_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA01G08200.1 (Glycine max), 5'ss of exon 2
GTTGTACCGACCACCTCGATGCTCACACTGTTCCATTTGCAATAACTGTGTGGAACGGTTTGATCATCACTGTCCATGGGTCGGCCAGTGCATAGGACTGgtaagttacacaagattactaggtgtttcataggcgtcctcatattacttgaattgatatttagagctactatttctgggtacattttttttgaatgt-tgactaactttctattttgttaagactgaccatcaatgtatttgtgcag
| | ||||| || ||||||||||| ||||| || || || ||||||||||||||||||||||| ||||||| ||| ||||| || ||||| || || || ||| |||      |||   |   ||| || |||  ||  |  ||||  ||    |  | | |      | | |||  ||| |    |   || |     |   ||| |                                        
GCTCTACCGGCCTCCTCGATGCTCGCACTGCTCAATCTGTAATAACTGTGTGGAACGGTTTGACCATCACTATCCTTGGGTTGGGCAGTGTATTGGGCTAgtatgttg-----gatcttt---tgtctcctag-tgttattttattcttttttcttttttgtgtgaagaatgttttgggggaagagtagcttaatcccattgttaagtg---------------------------------------

upper sequence: GRMZM2G068657_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA05G38360.1 (Glycine max), 5'ss of exon 3
GTTGTACCGACCACCTCGATGCTCACACTGTTCCATTTGCAATAACTGTGTGGAACGGTTTGATCATCACTGTCCATGGGTCGGCCAGTGCATAGGACTGgtaagttacacaagattactaggtgtttcataggcgtcctcatattacttgaattgatatttagagctactatttctgggtacattttttttgaatgttgactaactttctattttgttaagactgaccatcaatgtatttgtgcag
| | ||| |||| |  ||    || || |||||  | ||  ||||||| ||||| || |||||||||||||| |||||||| || ||||| || |||||||||    |||     |   |      |||| |    |  |  |||  |  | |    |||  | || |  |||   | |    |  ||     | ||     | | ||                                       
GCTCTACAGACCCCTCCGTGCTTCTCATTGTTCAGTCTGTGATAACTGCGTGGAGCGATTTGATCATCACTGCCCATGGGTTGGTCAGTGTATTGGACTGgta----acaaccattctttcataacttcacat---ttatggtatc-caaggaacactatacacaggttatatacatagccctagattccgatactggcatttgaatt---------------------------------------

upper sequence: GRMZM2G068657_T02 (Zea mays), 5'ss of exon 3
lower sequence: AT5G41060.1 (Arabidopsis thaliana), 5'ss of exon 3
GTTGTACCGACCACCTCGATGCTCACACTGTTCCATTTGCAATAACTGTGTGGAACGGTTTGATCATCACTGTCCATGGGTCGGCCAGTGCATAGGACTGgtaagttacacaagattactaggtgtttcataggcgtcctcatattacttgaattgatatttagagctactatttctgggtacattttttttgaatgttgactaactttctattttgttaagactgaccatcaatgtatttgtgcag
| | ||  |||| ||||| |||||||| ||||| |||||||| |||||||| ||| ||||||| ||||||||||| ||||| || || || || |  |  ||||||| | |    || |   || || |      ||||     || ||   ||   | | || |  |   || ||       ||| |  |||    ||  |                                             
GCTCTATAGACCGCCTCGCTGCTCACATTGTTCGATTTGCAACAACTGTGTAGAAAGGTTTGACCATCACTGTCCTTGGGTTGGTCAATGTATTGCTCAAgtaagtttctcggtttttc---gttttcc-----tgtccgttagtttctgacatcagtctatataatt--catctc-------attctccttgggaatttgcag-------------------------------------------

upper sequence: GRMZM2G068657_T02 (Zea mays), 5'ss of exon 3
lower sequence: AT3G26935.1 (Arabidopsis thaliana), 5'ss of exon 3
GTTGTACCGACCACCTCGATGCTCACACTGTTCCATTTGCAATAACTGTGTGGAACGGTTTGATCATCACTGTCCATGGGTCGGCCAGTGCATAGGACTGgtaagttacacaagattactaggtgtttcataggcgtcctcatattacttgaattgatatttagagctactatttctgggtacattttttttgaatgttgactaactttctattttgttaagactgaccatcaatgtatttgtgcag
| | ||  | || ||||| ||||| || || || |||||||| ||||| || ||| ||||||| |||||||| || ||||||||||| || || ||  |||||||| | |    |         || |   ||   ||| ||||   | |   ||  ||  ||      |   |||||   |   || ||                                                         
GCTCTATAGGCCGCCTCGCTGCTCGCATTGCTCAATTTGCAACAACTGCGTAGAAAGGTTTGACCATCACTGCCCTTGGGTCGGCCAATGTATTGGGATGgtaagtcaaaatccaactgatcccgtctttaagctatccacataaaccatagtttcctaaatatcatctcatattctg---atggttgttgcag-----------------------------------------------------

upper sequence: GRMZM2G068657_T02 (Zea mays), 5'ss of exon 3
lower sequence: Vv14s0068g01530.t01 (Vitis vinifera), 5'ss of exon 3
GTTGTACCGACCACCTCGATGCTCACACTGTTCCATTTGCAATAACTGTGTGGAACGGTTTGATCATCACTGTCCATGGGTCGGCCAGTGCATAGGACTGgtaagttacacaagattactaggtgtttcataggcgtcctcatattacttgaattgatatttagagctactatttctgggtacattttttttgaatgttgactaactttctattttgttaagactgaccatcaatgtatttgtgcag
| | ||  |||| ||||| ||||||||||||||||| || |||||||| || ||||| |||||||| ||||| || ||||| || ||||| || |||||||||||       |||| | |   | ||| | |     ||| ||   |     ||||  || || |||   |||     |    |   |||   ||  |  ||  ||  |  ||   ||                             
GCTTTATAGACCTCCTCGCTGCTCACACTGTTCCATATGTAATAACTGCGTCGAACGATTTGATCACCACTGCCCTTGGGTTGGGCAGTGTATTGGACTGgtaag-------agataaat---tattttaga-----ccttatgacat----attgg-atgtatagcctatatccaaagaagtaacatttacaaaactcaac--accattcatggggtgggt-------------------------

upper sequence: GRMZM2G068657_T02 (Zea mays), 5'ss of exon 3
lower sequence: Vv17s0000g00800.t01 (Vitis vinifera), 5'ss of exon 3
GTTGTACCGACCACCTCGATGCTCACACTGTTCCATTTGCAATAACTGTGTGGAACGGTTTGATCATCACTGTCCATGGGTCGGCCAGTGCATAGGACTGgtaagttacacaagattactaggtgtttcataggcgtcctcatattacttgaattgatatttagagctactat-ttctgggtacattttttttgaatgttgactaactttctattttgttaagactgaccatcaatgtatttgtgcag
| | ||  |||| ||||| || ||||||||||| || |||||||| ||||||||||| ||||| |||||||| || ||||| || || || || ||||||||||   |||      |  ||  ||| ||| | || | || |   ||  | ||| |  ||| | |  ||||   || |||| || |   |||    | || | |                                            
GCTTTATAGACCTCCTCGCTGTTCACACTGTTCAATATGCAATAATTGTGTGGAACGATTTGACCATCACTGCCCTTGGGTTGGTCAATGTATTGGACTGgtaatgaacatt---cttttaactgtatcacatgctttctaaatgtaaattaat-gccattgacaaatactgcattatgggaacctagatttgttgtctttatt--------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148966165|gb|EE017106.2|EE017106
EST:     TGGAACGGTTTGATCATCACTGTCCATGGGTCGGCCAGTGCATAGGACTG                         CGTAATTATCGGTTCTTCTATATGTTTGTATCCTCGACAACATTGCTCTGC
genomic: TGGAACGGTTTGATCATCACTGTCCATGGGTCGGCCAGTGCATAGGACTGgtaagttaca ... atttgtgcagCGTAATTATCGGTTCTTCTATATGTTTGTATCCTCGACAACATTGCTCTGC
EST: gi|71325398|gb|DR799378.1|DR799378
EST:     TGGAACGGTTTGATCATCACTGTCCATGGGTCGGCCAGTGCATAGGACTG                         CGTAATTATCGGTTCTTCTATATGTTTGTATCCTCGACAACATTGCTCTGC
genomic: TGGAACGGTTTGATCATCACTGTCCATGGGTCGGCCAGTGCATAGGACTGgtaagttaca ... atttgtgcagCGTAATTATCGGTTCTTCTATATGTTTGTATCCTCGACAACATTGCTCTGC
EST: gi|101385920|gb|EB815008.1|EB815008
EST:     TGGAACGGGTTGATCATCACTGTCCATGGGTCGGCCAGTGCATAGGACTG                         CGTAATTATCGGTTCTTCTATATGTTTGTATCCTCGACAACATTGCTCTGC
genomic: TGGAACGGTTTGATCATCACTGTCCATGGGTCGGCCAGTGCATAGGACTGgtaagttaca ... atttgtgcagCGTAATTATCGGTTCTTCTATATGTTTGTATCCTCGACAACATTGCTCTGC
EST: gi|78115179|gb|DV533567.1|DV533567
EST:     TGGAACGGTTTGATCATCACTGTCCATGGGTCGGCCAGTGCATAGGACTG                         CGTAATTATCGGTTCTTCTATATGTTTGTATCCTCGACAACATTGCTCTGC
genomic: TGGAACGGTTTGATCATCACTGTCCATGGGTCGGCCAGTGCATAGGACTGgtaagttaca ... atttgtgcagCGTAATTATCGGTTCTTCTATATGTTTGTATCCTCGACAACATTGCTCTGC
EST: gi|71325717|gb|DR799546.1|DR799546
EST:     TGGAACGGTTTGATCATCACTGTCCCTGGGTCGGCCAGTGCATAGGACTG                         CGTAATTATCGGTTCTTCTATATGTTTGTA
genomic: TGGAACGGTTTGATCATCACTGTCCATGGGTCGGCCAGTGCATAGGACTGgtaagttaca ... atttgtgcagCGTAATTATCGGTTCTTCTATATGTTTGTA
EST: gi|148960850|gb|EE011526.2|EE011526
EST:     TGGAACGGTTTGATCATCACTGTCCATGGGTCGGCCAGTGCATAGGACTG                         CGTAATTATCGGTTCTTCTATATGTTTGTATCCTCGACAACATTGCTCTGC
genomic: TGGAACGGTTTGATCATCACTGTCCATGGGTCGGCCAGTGCATAGGACTGgtaagttaca ... atttgtgcagCGTAATTATCGGTTCTTCTATATGTTTGTATCCTCGACAACATTGCTCTGC