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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATTTCGCCTTCAAAAATCATAATGAGAGTGGGATTGCCAATCTTTACAGTTTGCACTCTTGGATTGGGATAGGGACGATTACTTTGTATGGTATTCAGgtaaggtcatgcatatgatggcaaagttagatagttggattgggattgcacttatatttgcctaatttatcacag

Basic information

species Zea mays
transcript GRMZM2G066885_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G066885_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os02g42890.1 (Oryza sativa), 5'ss of exon 3
ATATTTCGCCTTCAAAAATCATAATGAGAGTGGGATTGCCAATCTTTACAGTTTGCACTCTTGGATTGGGATAGGGACGATTACTTTGTATGGTATTCAGgtaaggtcatgcatatgatggcaa---------agttagatagttggattgggattgcacttat-atttgcct---------aatttatcacag------
||| | ||| ||||||  ||| ||||| ||||| |||||||| || |||||| |||| |||||| ||||||| || || |||  ||||||||||||||||||||   | ||||||||   ||||         |  ||     |||  || |        |||| ||||| ||         || |||  ||||      
ATACTGCGCTTTCAAATTTCACAATGAAAGTGGAATTGCCAACCTCTACAGTCTGCATTCTTGGCTTGGGATTGGAACAATTTGTTTGTATGGTATTCAGgtaaccccttgcatatggcagcaattctattccatataagccattgacttagtccaattattatgatttgtctgaaaccgtcaacttacaacagaaccaa

upper sequence: GRMZM2G066885_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA20G29750.1 (Glycine max), 5'ss of exon 3
ATATTTCGCCTTCAAAAATCATAATGAGAGTGGGATTGCCAATCTTTACAGTTTGCACTCTTGGATTGGGATAGGGACGATTACTTTGTATGGTATTCAGgtaaggtcatgcatatgatggcaaagttagatagttggattgggattgcacttatatttgcctaatttatcacag----------------------------------
 |||   ||||||||  |||| ||||| ||||||||||||||||| ||||| ||||| || ||| |||| || |||   |||    | ||||| ||||||||||     |||||||||   | |||     |  ||||||| | ||| |||  |  |    |   |  |||||||                                  
TTATACTGCCTTCAAGTATCACAATGAAAGTGGGATTGCCAATCTCTACAGCTTGCATTCATGGCTTGGAATTGGGGTTATTGTCCTTTATGGCATTCAGgtaaaccactgcatatga---ctaagc---gtgtttggattcgcatt-cacacaactcaaac--gtggatcacagaagcaacttttagttgctttttggtgcatcttga
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211096758|gb|FL470670.1|FL470670
EST:     GTCTGCACTCTTGGATTGGGATAGGGACGATTACTTTGTATGGTATTCAG                         TGGATAGTTGGATTCGTTACATTCTTCTTCCCTGGTGCTGCGCCAAACGTG
genomic: GTTTGCACTCTTGGATTGGGATAGGGACGATTACTTTGTATGGTATTCAGgtaaggtcat ... tttatcacagTGGATAGTTGGATTCGTTACATTCTTCTTCCCTGGTGCTGCGCCAAACGTG
EST: gi|211055163|gb|FK977534.1|FK977534
EST:     GTCTGCACTCTTGGATTGGGATAGGGACGATTACTTTGTATGGTATTCAG                         TGGATAGTTGGATTCGTTACATTCTTCTTCCCTGGTGCTGCGCCAAACGTG
genomic: GTTTGCACTCTTGGATTGGGATAGGGACGATTACTTTGTATGGTATTCAGgtaaggtcat ... tttatcacagTGGATAGTTGGATTCGTTACATTCTTCTTCCCTGGTGCTGCGCCAAACGTG
EST: gi|148965066|gb|EC906072.2|EC906072
EST:     GTTTGCACTCTTGGATTGGGATAGGGACGATTACTTTGTATGGTATTCAG                         TGGATAGTTGGATTCGTTACATTCTTCTTCCCTGGTGCTGCGCCAAACGTG
genomic: GTTTGCACTCTTGGATTGGGATAGGGACGATTACTTTGTATGGTATTCAGgtaaggtcat ... tttatcacagTGGATAGTTGGATTCGTTACATTCTTCTTCCCTGGTGCTGCGCCAAACGTG
EST: gi|50323144|gb|CO518270.1|CO518270
EST:     GTTTGCACTCTTGGATTGGGATAGGGACGATTACTTTGTATGGTATTCAG                         TGGATAGTTGGATTCGTTACATTCTTCTTCCCTGGTGCTGCGCCAAACGTG
genomic: GTTTGCACTCTTGGATTGGGATAGGGACGATTACTTTGTATGGTATTCAGgtaaggtcat ... tttatcacagTGGATAGTTGGATTCGTTACATTCTTCTTCCCTGGTGCTGCGCCAAACGTG
EST: gi|211055161|gb|FK977532.1|FK977532
EST:     GTCTGCACTCTTGGATTGGGATAGGGACGATTACTTTGTATGGTATTCAG                         TGGATAGTTGGATTCGTTACATTCTTCTTCCCTGGTGCTGCGCCAAACGTG
genomic: GTTTGCACTCTTGGATTGGGATAGGGACGATTACTTTGTATGGTATTCAGgtaaggtcat ... tttatcacagTGGATAGTTGGATTCGTTACATTCTTCTTCCCTGGTGCTGCGCCAAACGTG
EST: gi|148946110|gb|EC891404.2|EC891404
EST:     GTTTGCACTCTTGGATTGGGATAGGGACGATTACTTTGTATGGTATTCAG                         TGGATAGTTGGATTCGTTACATTCTTCTTCCCTGGTGCTGCGCCAAACGTG
genomic: GTTTGCACTCTTGGATTGGGATAGGGACGATTACTTTGTATGGTATTCAGgtaaggtcat ... tttatcacagTGGATAGTTGGATTCGTTACATTCTTCTTCCCTGGTGCTGCGCCAAACGTG
EST: gi|76287729|gb|DV027297.1|DV027297
EST:     GTTTGCACTCTTGGATTGGGATAGGGACGATTACTTTGTATGGTATTCAG                         TGGATAGTTGGATTCGTTACATTCTTCTTCCCTGGTGCTGCGCCAAACGTG
genomic: GTTTGCACTCTTGGATTGGGATAGGGACGATTACTTTGTATGGTATTCAGgtaaggtcat ... tttatcacagTGGATAGTTGGATTCGTTACATTCTTCTTCCCTGGTGCTGCGCCAAACGTG