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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTGGACGTCAAAACTCTATTTCTGATCGAGCAAAAGTTGCAATGCAAGAATATCTAAACCATTTCTTAGGGAACTTGGATATCGTCAATTCACGGGAGgtactaaaagctttgtacatttcaaagtagacaccctcataattgaacattaaaatgttaatcagaacaccttatttggctatctttattcaatttatttgcactacag

Basic information

species Zea mays
transcript GRMZM2G066485_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G066485_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os05g29050.1 (Oryza sativa), 5'ss of exon 3
TCTTGGACGTCAAAACTCTATTTCTGATCGAGCAAAAGTTGCAATGCAAGAATATCTAAACCATTTCTTAGGGAACTTGGATATCGTCAATTCACGGGAGgtactaaaagctttgtacatttcaaagtagacaccctcataattgaacatta-aaatgttaatcagaacaccttatttggctatctttattcaatttatttgcacta--cag-------------------------
||| || |||||| ||||  |||||||||||||||||||||| |||||||||||||| |||||||| || ||||||||||| || ||||| |||| ||||||||| |   |      | ||  | | |  || |  |  |     |  |  | ||||||| | || || | | ||| ||   ||||  |||   |||||   ||  |  |||                         
TCTGGGGCGTCAACACTCAGTTTCTGATCGAGCAAAAGTTGCCATGCAAGAATATCTGAACCATTTTTTGGGGAACTTGGACATTGTCAACTCACCGGAGgtactcattacccaaatctttatacatttcactctattgtttccaattagaataaatgttgaccaaaatatcctatctg--catctagattagttttatcgtcaagagtcagtactaaaatatctttcaaaatacag

upper sequence: GRMZM2G066485_T01 (Zea mays), 5'ss of exon 3
lower sequence: AT3G16785.1 (Arabidopsis thaliana), 5'ss of exon 4
TCTTGGACGTCAAAACTCTATTTCTGATCGAGCAAAAGTTGCAATGCAAGAATATCTAAACCATTTCTTAGGGAACTTGGATATCGTCAATTCACGGGAGgtactaaaagctttgtacatttcaaagtagacaccctcataattgaacattaaaatgttaatcagaacaccttatttggctatctttattcaatttatttgcactacag
| | ||| | ||  | || || || | | ||| |||   |||||||||||||||||| || |||||  | |||||  | ||||||||||||||||||||||||        |||||| | |  |    |           || |  || |||||||  | |  |        | |   |   | |||  ||  | ||||    ||| | 
TTTGGGAAGACAGCAGTCCATATCAGTTAGAGGAAAGCATGCAATGCAAGAATATCTGAATCATTTTCTGGGGAATCTTGATATCGTCAATTCACGGGAGgtat------atttgtaaaatctatttcacttggttgttcaact--actttaaaattgttaatacctagttatgtcaagggttgttttctct-tctattctagctagaa