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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAACATGAGCCTGGGCAAGGTCGCCGTCTCCTTCACGCACACCATCAAGGCCTCCGAGCCCTTCTTCACCGTCGTCCTCTCCGCCCTCTTCCTCGGCGAGgttcgccaccctctcgctccgtcgtcgcactcgcaccctcctgaaaaagcactctcgccgattccgccgtgaatggaatcgagaagaaaccagaaaagaaaaaggtggagcctatgatcagtttccattccatgcttggtatgcag

Basic information

species Zea mays
transcript GRMZM2G066413_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G066413_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g07730.1 (Oryza sativa), 5'ss of exon 3
CAACATGAGCCTGGGCAAGGTCGCCGTCTCCTTCACGCACACCATCAAGGCCTCCGAGCCCTTCTTCACCGTCGTCCTCTCCGCCCTCTTCCTCGGCGAGgttcgccaccctctcgctccgtcgtcgcactcgcaccctcctgaaaaagcactctcgccgattccg---ccgtgaatggaatcgagaagaaaccagaaaagaaaaaggtggagcctatgatcagtttccattccatgcttggtatgcag
||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||  |  || |  |      |  ||  |  ||   |  | | || |    | |   || || | |      |||  || | |  ||                                                               
CAACATGAGCCTGAGCAAGGTCGCCGTCTCCTTCACCCACACCATCAAGGCGTCCGAGCCCTTCTTCACCGTCCTCCTCTCCGCCTTCTTCCTCGGCGAGgtgggtgacacaattcagtgg--gttcctgtcaatcgattcagagatgaaattggtgctgaattcaaatttgtgtttgaattgcag---------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211269384|gb|FL189988.1|FL189988
EST:     CCTCCGAGCCCTTCTTCACCGTCGTCCTCTCCGCCCTCTTCCTCGGCGAG                         GTTCCTTCCCTTCCGGTGCTGGGTTCGCTCGTGCCGATCGTTGGCGGCGTC
genomic: CCTCCGAGCCCTTCTTCACCGTCGTCCTCTCCGCCCTCTTCCTCGGCGAGgttcgccacc ... tggtatgcagGTTCCTTCCCTTCCGGTGCTGGGCTCGCTCGTGCCGATCGTTGGCGGCGTC
EST: gi|67024608|gb|CO453357.1|CO453357
EST:     CCTCCGAGCCCTTCTTCACCGTCGTCCTCTCCGCCCTCTTCCTCGGCGAG                         GTTCCTTCCCTTCCGGTGCTGGGCTCGCTCGTGCCGATCGTTGGCGGCGTC
genomic: CCTCCGAGCCCTTCTTCACCGTCGTCCTCTCCGCCCTCTTCCTCGGCGAGgttcgccacc ... tggtatgcagGTTCCTTCCCTTCCGGTGCTGGGCTCGCTCGTGCCGATCGTTGGCGGCGTC