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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCTGAACCTCCGGTCTGAGATCGTGCCTGCCACGCTCAAGAAGTCTGCCAAGCCACCGGGCCGCCCATTTGGCTCTGGCCCTCCTGGTAACCGCCCAAGgtaaaagccttaaatcttgtgttgctgaggcaataatataacagagcatggggtggtgggattaaattatccgccatgatag

Basic information

species Zea mays
transcript GRMZM2G065237_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G065237_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os04g35090.1 (Oryza sativa), 5'ss of exon 3
ACCTGAACCTCCGGTCTGAGATCGTGCCTGCCACGCTCAAGAAGTCTGCCAAGCCACCGGGCCGCCCATTTGGCTCTGGCCCTCCTGGTAACCGCCCAAGgtaaaagcctta----aatcttgtgtt---gctgaggcaata----atataacagagcatggggtggtgggattaaattatccgccatgatag--------
|||| ||||| |  |||||||| ||||||||||| |||||||||||||||| |||||| |||||||||||||| |||||||| |||||  ||||||||||||| |    ||      ||  |   ||   |   | |||||     |||||  | |   ||   | |||    |      |  | ||  ||          
ACCTTAACCTGCCATCTGAGATTGTGCCTGCCACACTCAAGAAGTCTGCCAGGCCACCTGGCCGCCCATTTGGTTCTGGCCCACCTGGCGACCGCCCAAGgtatacatattctcgtgatgctcccttcaagtgcatgcaatttggcatatactataatgtgct-tagtgaacatggggcctgtgtcaccatttcaccatga

upper sequence: GRMZM2G065237_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os02g34460.1 (Oryza sativa), 5'ss of exon 3
ACCTGAACCTCCGGTCTGAGATCGTGCCTGCCACGCTCAAGAAGTCTGCCAAGCCACCGGGCCGCCCATTTGGCTCTGGCCCTCCTGGTAACCGCCCAAGgt---aaaagccttaaatctt--gtgttgctgaggcaataa-tataacagagcatggggtggtgggatt---aaattatccgccatgatag----------
|||| ||| | | ||||||||| || ||||| || |||||||||||||| | |||||| ||||||||||||||||||||||| |||||| | ||||||||||   ||    |||   ||||   | || ||| ||    || | ||||  | |||    |       ||   || ||    |  ||  ||           
ACCTTAACTTGCCGTCTGAGATTGTACCTGCTACACTCAAGAAGTCTGCAAGGCCACCAGGCCGCCCATTTGGCTCTGGCCCCCCTGGTGATCGCCCAAGgtcctaattttcttctctcttcaatctttctggggtttcaagtgtaactta-catttaataacttacttgctaatttgaaggttattttatcgcggtttac