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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTCATCAAAGACTTCGAGCGAGTTAGCAAAGCTGAGGCTGAGCATACTGATCCAGCAACAGCAAAAATGTTGCATGACAGAAAGCAGTCGATGgtactattgccaaaactgattgcatgatagatgtcatatgcgtgaatggttgcacttaccttttctggttcaacaggtttcgctaaactagagtttcttgtttgcag

Basic information

species Zea mays
transcript GRMZM2G065105_T02
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32910504|gb|CF015316.1|CF015316
EST:     ATACTGATCCAGCAACAGCAAAAATGTTGCATGACAGAAAGCAGTCGATG                         ATCAAAGAATTAAACTCCTACGTTGCTCTAAAGAAACA
genomic: ATACTGATCCAGCAACAGCAAAAATGTTGCATGACAGAAAGCAGTCGATGgtactattgc ... ttgtttgcagATCAAAGAATTAAACTCCTACGTTGCTCTAAAGAAACA
EST: gi|211162284|gb|FL231527.1|FL231527
EST:     ATACTGATCCAGCAACAGCAAAAATGTTGCATGACAGAAAGCAGTCGATG                         ATCAAAGAATTAAACTCCTACGTTGCTCTAAAGAAACA
genomic: ATACTGATCCAGCAACAGCAAAAATGTTGCATGACAGAAAGCAGTCGATGgtactattgc ... ttgtttgcagATCAAAGAATTAAACTCCTACGTTGCTCTAAAGAAACA
EST: gi|60340573|gb|DN207546.1|DN207546
EST:     ATACTGATCCAGCAACAGCAAAAATGTTGCATGACAGAAAGCAGTCGATG                         ATCAAAGAATTAAACTCCTACGTTGCTCTAAAGAAACA
genomic: ATACTGATCCAGCAACAGCAAAAATGTTGCATGACAGAAAGCAGTCGATGgtactattgc ... ttgtttgcagATCAAAGAATTAAACTCCTACGTTGCTCTAAAGAAACA
EST: gi|211162277|gb|FL231520.1|FL231520
EST:     ATACTGATCCAGCAACAGCAAAAATGTTGCATGACAGAAAGCAGTCGATG                         ATCAAAGAATTAAACTCCTACGTTGCTCTAAAGAAACAG
genomic: ATACTGATCCAGCAACAGCAAAAATGTTGCATGACAGAAAGCAGTCGATGgtactattgc ... ttgtttgcagATCAAAGAATTAAACTCCTACGTTGCTCTAAAGAAACAG
EST: gi|89246761|gb|DY618548.1|DY618548
EST:     AGCAACAGCAAAAATGTTGCATGACAGAAAGCAGTCGATG                         ATCAAAGAATTAAACTCTTACGTTGCTCTAAAGAAACAGCA
genomic: AGCAACAGCAAAAATGTTGCATGACAGAAAGCAGTCGATGgtactattgc ... ttgtttgcagATCAAAGAATTAAACTCCTACGTTGCTCTAAAG-AA-A-CA
EST: gi|211357112|gb|FL231558.1|FL231558
EST:     ATACTGATCCAGCAACAGCAAAAATGTTGCATGACAGAAAGCAGTCGATG                         ATCAAAGAATTAAACTCCTACGTTGCTCTAAAGAAACA
genomic: ATACTGATCCAGCAACAGCAAAAATGTTGCATGACAGAAAGCAGTCGATGgtactattgc ... ttgtttgcagATCAAAGAATTAAACTCCTACGTTGCTCTAAAGAAACA
EST: gi|211357114|gb|FL231560.1|FL231560
EST:     ATACTGATCCAGCAACAGCAAAAATGTTGCATGACAGAAAGCAGTCGATG                         ATCAAAGAATTAAACTCCTACGTTGCTCTAAAGAAACA
genomic: ATACTGATCCAGCAACAGCAAAAATGTTGCATGACAGAAAGCAGTCGATGgtactattgc ... ttgtttgcagATCAAAGAATTAAACTCCTACGTTGCTCTAAAGAAACA
EST: gi|71761831|gb|DR959768.1|DR959768
EST:     ATACTGATCCAGCAACAGCAAAAATGTTGCATGACAGAAAGCAGTCGATG                         ATCAAAGAATTAAACTCCTACGTTGCTCTAAAGAAACAGCA
genomic: ATACTGATCCAGCAACAGCAAAAATGTTGCATGACAGAAAGCAGTCGATGgtactattgc ... ttgtttgcagATCAAAGAATTAAACTCCTACGTTGCTCTAAAG-AA-A-CA