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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTGGGCGATCGCTGATTCCAAACGCCAAGGATATCTTGGATTCTACGAGTTCATGACTGCCATGCAGgtttgtacagtatacattgatcaggttcttcttcagtctgatctccggcctacaacatggactttttttttctcttctatttgtacattaaaccggatagcaatgtgcag

Basic information

species Zea mays
transcript GRMZM2G065012_T03
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G065012_T03 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os04g57350.1 (Oryza sativa), 5'ss of exon 3
GTTTGGGCGATCGCTGATTCCAAACGCCAAGGATATCTTGGATTCTACGAGTTCATGACTGCCATGCAGgtttgtacagtatacattgatcaggttcttcttcagtctgatctccggcctacaacatggactttttttttctcttctatttgtacattaaaccggatagcaatgtgcag
|| ||||| |||||||||||||| || || || |||||||||||||  ||||| ||||| || |||||||| ||| | ||  ||| ||||    |  || |   |          |||     |  || | ||  |  | |  ||    | |||||||||| |  ||  | ||||||||
GTCTGGGCAATCGCTGATTCCAAGCGTCAGGGTTATCTTGGATTCTCGGAGTTTATGACCGCAATGCAGgtatgttc-gtg-acactgatt---tatttttgtgg----------ggc-----atttgtatttgatgctgcaattgatatggtacattaaagcacatgccgatgtgcag

upper sequence: GRMZM2G065012_T03 (Zea mays), 5'ss of exon 3
lower sequence: Vv00s0516g00020.t01 (Vitis vinifera), 5'ss of exon 3
GTTTGGGCGATCGCTGATTCCAAACGCCAAGGATATCTTGGATTCTACGAGTTCATGACTGCCATGCAGgtttgtacagtatacattgatcaggttcttcttcagtctgatctccggcctacaacatggactttttttttctcttctatttgtacattaaaccggatagcaatgtgcag
|||||||| || || ||||||||||| ||||||| |||||| |||   |||||||| ||||| |||||||||  | |  |  ||||| ||     |  | || |     |   |     |  ||   | |||   | ||| |    |||||    | | ||| |               
GTTTGGGCTATTGCAGATTCCAAACGACAAGGATTTCTTGGTTTCAGGGAGTTCATCACTGCAATGCAGgttcctcctttcaacattcatt---cttgtatttatatcaa---ctaatttgtaa---gaactcgatatttat---ttattttggtaatgaacag---------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76283614|gb|DV023182.1|DV023182
EST:     CCAAACGCCAAGGATATCTTGGATTCTACGAGTTCATGACTGCCATGCAG                         CTGGTTTCTCTCGCACAAGCAGGGAACGAAATCAATCAAGACACCCTTCCA
genomic: CCAAACGCCAAGGATATCTTGGATTCTACGAGTTCATGACTGCCATGCAGgtttgtacag ... caatgtgcagCTGGTTTCTCTCGCACAAGCAGGGAACGAAATCAATCAAGACACCCTTCCA
EST: gi|71333237|gb|DR803673.1|DR803673
EST:     CCAAACGCCAAGGATATCTTGGATTCTACGAGTTCATGACTGCCATGCAG                         CTGGTTTCTCTCGCACAAGCAGGGAACGAAATCAATCAAGACACCCTTCCA
genomic: CCAAACGCCAAGGATATCTTGGATTCTACGAGTTCATGACTGCCATGCAGgtttgtacag ... caatgtgcagCTGGTTTCTCTCGCACAAGCAGGGAACGAAATCAATCAAGACACCCTTCCA
EST: gi|71769027|gb|DR966964.1|DR966964
EST:     CCAAACGCCAAGGATATCTTGGATTCTACGAGTTCATGACTGCCATGCAG                         CTGGTTTCTCTCGCACAAGCAGGGAACGAAATCAATCAAGACACCCTTCCA
genomic: CCAAACGCCAAGGATATCTTGGATTCTACGAGTTCATGACTGCCATGCAGgtttgtacag ... caatgtgcagCTGGTTTCTCTCGCACAAGCAGGGAACGAAATCAATCAAGACACCCTTCCA