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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGGATTACTACAGAATTCAGGCCCATCAAAGAAGTGGATGTGGTATTCTTGCTATGTTGGCATTTTGGTAGCCATCTTTTGGACATACTACATCTTGAGgtatatcgtcttagtcaacttatctttttttcccttcccatgtcactcaaatgctttgctaaaatattagcatttcaaaaccatttgtatcatgtcagcactattctagctgttgtagctacactaacacacagcagccagttctagatatggtattccttctgactgttggtgttgtag

Basic information

species Zea mays
transcript GRMZM2G064767_T04
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G064767_T04 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g37850.1 (Oryza sativa), 5'ss of exon 5
AAGGATTACTACAGAATT--CAGGCCCATCAAAGAAGTGGATGTGGTATTCTTGCTATGTTGGCATTTTGGTAGCCATCTTTTGGACATACTACATCTTGAGgtatatcgtcttagtcaacttatctttttttcccttcccatgtcactcaaatgctttgctaaaatattagcatttcaaaaccatttgtatcatgtcagcactattctagctgttgtagctacactaacacacagcagccagttctagatatggtattccttctgactgttggtgttgtag
       | || || |||      | | |  |||||||||||||||||||| | ||||||  ||||  | |||||| |||| |||||||||||| |||||||||||  | |     || |||  |   | ||| | ||    ||       | | |  |  ||  ||| | |  ||| |    |||    | ||  | | || ||  ||| |           ||  |||    || |        | |||  | |  |   | | ||| ||| || |  ||
--TCTCAATTAAAGGATTACTTCACTCCTGGAAGAAGTGGATGTGGTATTCATTCTATGTCAGCATACTAGTAGCCCTCTTCTGGACATACTACCTCTTGAGgtatcacatt---atctactagtaactatttgcttt---gtgcattgttattaccattttatgataatggtcttttatg--catg---accacataaacagta--ctaaccaac-------catcaacggctagaacttgtaatttgattggttgattggttttactcttg-tgctacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211076030|gb|FL472761.1|FL472761
EST:     TGCTATGTTGGCATTTTGGTAGCCATCTTTTGGACATACTACATCTTGAG                         GTTGCCAAGAATTCGATGGGATGTTGCATGGCTCCCACTCGGTCCTTTGAT
genomic: TGCTATGTTGGCATTTTGGTAGCCATCTTTTGGACATACTACATCTTGAGgtatatcgtc ... ggtgttgtagGTTGCCAAGAATTCGATGGGATGTTGCATGGCTCCCACTCGGTCCTTTGAT
EST: gi|71445073|gb|DR826123.1|DR826123
EST:     TGCTATGTTGGCATTTTGGTAGCCATCTTTTGGACATACTACATCTTGAG                         GTTGCCAAGAATTCGATGGGATGTTGCATGGCTCCCACTCGGTCCTTTGAT
genomic: TGCTATGTTGGCATTTTGGTAGCCATCTTTTGGACATACTACATCTTGAGgtatatcgtc ... ggtgttgtagGTTGCCAAGAATTCGATGGGATGTTGCATGGCTCCCACTCGGTCCTTTGAT