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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTACTCGGGTCGAGCTCGCTGAAGTACCCAGGACAGCCGCAGGAAGTTCCTGTCTTTCAGAATACCACATTTTCGATCCCTGTAAATGATCCACATCAGgtaaaagagaagggttgtcatttatatgcacttttactttgtctgatacagtgatatctcgtgtcctgatttgcacaactctgctgattatatggtactgtacctttgctagttttaagatattgttggagcttgggtagggcctatttgttagtgtctatcatctttctctttcttgcag

Basic information

species Zea mays
transcript GRMZM2G064371_T03
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G064371_T03 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os12g34450.1 (Oryza sativa), 5'ss of exon 2
CTTACTCGGGTCGAGCTCGCTGAAGTACCCAGGACAGCCGCAGGAAGTTCCTGTCTTTCAGAATACCACATTTTCGATCCCTGTAAATGATCCACATCAGgtaaaagagaagggttgtcatttatatgcacttttactttgtctgatacagtgatatctcgtgtcctgatttgcacaactctgctgattatatggtactgtacctttgctagttttaagatattgttggagcttgggtagggcctatttgttagtgtctatcatctttctctttcttgcag
||| || || || |||||  |||||||||| || ||||| |||||  | |||||||||||||| | ||||||| | ||||||||||||||||| || ||||||||| |    || | | ||||   ||   | |  |  | |       |||| |   |    |  || || |      | |                                                                                                   
CTTTCTGGGATCAAGCTCAATGAAGTACCCTGGCCAGCCTCAGGAGATCCCTGTCTTTCAGAACAGCACATTTACTATCCCTGTAAATGATCCTCACCAGgtaaaacatgttggattttattttggtgggatgt-gcaatttacatcgaagtgtttaattacattatgtttcgattttttatcgcag----------------------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211516136|gb|FL164980.1|FL164980
EST:     CCGTCTTTCAGAATACCACATTTTCGATCCCTGTAAATGATCCACATCAG                         GTCTGGAATTCTAATGAGCACGAAGATTTGCAAGTTCTTGTGATCATATCA
genomic: CTGTCTTTCAGAATACCACATTTTCGATCCCTGTAAATGATCCACATCAGgtaaaagaga ... tttcttgcagGTCTGGAATTCTAATGAGCACGAAGATTTGCAAGTTCTTGTGATCATATCG
EST: gi|211236272|gb|FL396917.1|FL396917
EST:     CTGTCTTTCAGAATACCACATTTTCGATCCCTGTAAATGATCCACATCAG                         GTCTGGAATTCTAATGAGCACGAAGATTTGCAAGTTCTTGTGATCATATCG
genomic: CTGTCTTTCAGAATACCACATTTTCGATCCCTGTAAATGATCCACATCAGgtaaaagaga ... tttcttgcagGTCTGGAATTCTAATGAGCACGAAGATTTGCAAGTTCTTGTGATCATATCG
EST: gi|211440980|gb|FL373018.1|FL373018
EST:     CTGTCTTTCAGAATACCACATTTTCGATCCCTGTNAATGATCCACATCAG                         GTCTGGAATTGCTA-TGAGCACGAAGATTTGCAAGTTCTTGTGATCATATC
genomic: CTGTCTTTCAGAATACCACATTTTCGATCCCTGTAAATGATCCACATCAGgtaaaagaga ... tttcttgcagGTCTGGAATT-CTAATGAGCACGAAGATTTGCAAGTTCTTGTGATCATATC
EST: gi|211063592|gb|FL411757.1|FL411757
EST:     CTGTCTTTCAGAATACCACATTTTCGATCCCTGTAAATGATCCACATCAG                         GTCTGGAATTCTAATGAGCACGAAGATTTGCAAGTTCTTGTGATCATATCG
genomic: CTGTCTTTCAGAATACCACATTTTCGATCCCTGTAAATGATCCACATCAGgtaaaagaga ... tttcttgcagGTCTGGAATTCTAATGAGCACGAAGATTTGCAAGTTCTTGTGATCATATCG
EST: gi|78180987|gb|DV551360.1|DV551360
EST:     CCGTCTTTCAGAATACCACATTTTCGATCCCTGTAAATGATCCACATCAG                         GTCTGGAATTCTAATGAGCACGAAGATTTGCAAGTTCTTGTGATCATATCA
genomic: CTGTCTTTCAGAATACCACATTTTCGATCCCTGTAAATGATCCACATCAGgtaaaagaga ... tttcttgcagGTCTGGAATTCTAATGAGCACGAAGATTTGCAAGTTCTTGTGATCATATCG
EST: gi|8577300|gb|BE129937.1|BE129937
EST:     CCGTCTTTCAGAATACCACATTTTCGATCCCTGTAAATGATCCACATCAG                         GTCTGGAATTCTAATGAGCACGAAGATTTGCAAGTTCTTGTGATCATATCA
genomic: CTGTCTTTCAGAATACCACATTTTCGATCCCTGTAAATGATCCACATCAGgtaaaagaga ... tttcttgcagGTCTGGAATTCTAATGAGCACGAAGATTTGCAAGTTCTTGTGATCATATCG
EST: gi|12047263|gb|BF729402.1|BF729402
EST:     CCGTCTTTCAGAATACCACATTTTCGATCCCTGTAAATGATCCACATCAG                         GTCTGGAATTCTAATGAGCACGAAGATTTGCAAGTTCTTGGGATCATATCA
genomic: CTGTCTTTCAGAATACCACATTTTCGATCCCTGTAAATGATCCACATCAGgtaaaagaga ... tttcttgcagGTCTGGAATTCTAATGAGCACGAAGATTTGCAAGTTCTTGTGATCATATCG
EST: gi|6918664|gb|AW400194.1|AW400194
EST:     CTGTCTTTCAGAATACCACATTTTCGATCCCTGTAAATGATCCACATCAG                         GTCTGGAATTCTAATGAGCACGAAGATTTGCAAGTTCTTGTGATCATATCG
genomic: CTGTCTTTCAGAATACCACATTTTCGATCCCTGTAAATGATCCACATCAGgtaaaagaga ... tttcttgcagGTCTGGAATTCTAATGAGCACGAAGATTTGCAAGTTCTTGTGATCATATCG
EST: gi|9952569|gb|BE639257.1|BE639257
EST:     CTGTCTTTCAGAATACCACATTTTCGATCCCTGTAAATGATCCACATCAG                         GTCTGGAATTCTAATGAGCACGAAGATTTGCAA
genomic: CTGTCTTTCAGAATACCACATTTTCGATCCCTGTAAATGATCCACATCAGgtaaaagaga ... tttcttgcagGTCTGGAATTCTAATGAGCACGAAGATTTGCAA
EST: gi|211490328|gb|FL379763.1|FL379763
EST:     CTGTCTTTCAGAATACCACATTTTCGATCCCTGTAAATGATCCACATCAG                         GTCTGGAATTCTAATGAGCACGAAGATTTGCAAGTTCTTGTGATCATATCG
genomic: CTGTCTTTCAGAATACCACATTTTCGATCCCTGTAAATGATCCACATCAGgtaaaagaga ... tttcttgcagGTCTGGAATTCTAATGAGCACGAAGATTTGCAAGTTCTTGTGATCATATCG
EST: gi|211106738|gb|FL429079.1|FL429079
EST:     CCGTCTTTCAGAATACCACATTTTCGATCCCTGTAAATGATCCACATCAG                         GTCTGGAATTCTAATGAGCACGAAGATTTGC
genomic: CTGTCTTTCAGAATACCACATTTTCGATCCCTGTAAATGATCCACATCAGgtaaaagaga ... tttcttgcagGTCTGGAATTCTAATGAGCACGAAGATTTGC
EST: gi|32848146|gb|CD987827.1|CD987827
EST:     CTGTCTTTCAGAATACCACATTTTCGATCCCTGTAAATGATCCACATCAG                         GTCTGGAATTCTAATGAGCACGAAGATTTGCAAGTTCTTGTGATCATATCG
genomic: CTGTCTTTCAGAATACCACATTTTCGATCCCTGTAAATGATCCACATCAGgtaaaagaga ... tttcttgcagGTCTGGAATTCTAATGAGCACGAAGATTTGCAAGTTCTTGTGATCATATCG
EST: gi|211288157|gb|FL392359.1|FL392359
EST:     CTGTCTTTCAGAATACCACATTTTCGATCCCTGTAAATGATCCACATCAG                         GTCTGGAATTCTAATGAGCACGAAGATTTGCAAGTTCTTGTGATCATATCG
genomic: CTGTCTTTCAGAATACCACATTTTCGATCCCTGTAAATGATCCACATCAGgtaaaagaga ... tttcttgcagGTCTGGAATTCTAATGAGCACGAAGATTTGCAAGTTCTTGTGATCATATCG
EST: gi|211032073|gb|FL384599.1|FL384599
EST:     CTGTCTTTCAGAATACCACATTTTCGATCCCTGTAAATGATCCACATCAG                         GTCTGGAATTCTAATGAGCACGAAGATTTGCAAGTTCTTGTGATCATATCG
genomic: CTGTCTTTCAGAATACCACATTTTCGATCCCTGTAAATGATCCACATCAGgtaaaagaga ... tttcttgcagGTCTGGAATTCTAATGAGCACGAAGATTTGCAAGTTCTTGTGATCATATCG
EST: gi|211430009|gb|FL445195.1|FL445195
EST:     CTGTCTTTCAGAATACCACATTTTCGATCCCTGTAAATGATCCACATCAG                         GTCTGGAATTCTAATGAGCACGAAGATTTGCAAGTTCTTGTGATCATATCG
genomic: CTGTCTTTCAGAATACCACATTTTCGATCCCTGTAAATGATCCACATCAGgtaaaagaga ... tttcttgcagGTCTGGAATTCTAATGAGCACGAAGATTTGCAAGTTCTTGTGATCATATCG
EST: gi|211236771|gb|FL420040.1|FL420040
EST:     CTGTCTTTCAGAATACCACATTTTCGATCCCTGTAAATGATCCACATCAG                         GTCTGGAATTCTAATGAGCACGAAGATTTGCAAGTTCTTGTGATCATATCG
genomic: CTGTCTTTCAGAATACCACATTTTCGATCCCTGTAAATGATCCACATCAGgtaaaagaga ... tttcttgcagGTCTGGAATTCTAATGAGCACGAAGATTTGCAAGTTCTTGTGATCATATCG
EST: gi|211507889|gb|FL229580.1|FL229580
EST:     CTGTCTTTCAGAATACCACATTTTCGATCCCTGTAAATGATCCACATCAG                         GTCTGGAATTCTAATGAGCACGAAGATTTGCAAGTTCTTGTGATCATATCG
genomic: CTGTCTTTCAGAATACCACATTTTCGATCCCTGTAAATGATCCACATCAGgtaaaagaga ... tttcttgcagGTCTGGAATTCTAATGAGCACGAAGATTTGCAAGTTCTTGTGATCATATCG
EST: gi|211438792|gb|FL370296.1|FL370296
EST:     CTGTCTTTCAGAATACCACATTTTCGATCCCTGTAAATGATCCACATCAG                         GTCTGGAATTCTAATGAGCACGAAG
genomic: CTGTCTTTCAGAATACCACATTTTCGATCCCTGTAAATGATCCACATCAGgtaaaagaga ... tttcttgcagGTCTGGAATTCTAATGAGCACGAAG
EST: gi|211516143|gb|FL164987.1|FL164987
EST:     CTGTCTTTCAGAATACCACATTTTCGATCCCTGTAAATGATCCACATCAG                         GTCTGGAATTCTAATGAGCACGAAGATTTGCAAGTTCTTGTGATCATATCG
genomic: CTGTCTTTCAGAATACCACATTTTCGATCCCTGTAAATGATCCACATCAGgtaaaagaga ... tttcttgcagGTCTGGAATTCTAATGAGCACGAAGATTTGCAAGTTCTTGTGATCATATCG
EST: gi|87152705|gb|DY397494.1|DY397494
EST:     CCGTCTTTCAGAATACCACATTTTCGATCCCTGTAAATGATCCACATCAG                         GTCTGGAATTCTAATGAGCACGAAGATTTGCAAGTTCTTGTGATCATATCA
genomic: CTGTCTTTCAGAATACCACATTTTCGATCCCTGTAAATGATCCACATCAGgtaaaagaga ... tttcttgcagGTCTGGAATTCTAATGAGCACGAAGATTTGCAAGTTCTTGTGATCATATCG
EST: gi|74034934|gb|DT535424.1|DT535424
EST:     GTAAATGATCCACATCAG                         GTCTGGAATTCTAATGAGCACGAAGATTTGCAAGTTCTTGTGATCATATCA
genomic: GTAAATGATCCACATCAGgtaaaagaga ... tttcttgcagGTCTGGAATTCTAATGAGCACGAAGATTTGCAAGTTCTTGTGATCATATCG
EST: gi|211439420|gb|FL403340.1|FL403340
EST:     CTGTCTTTCAGAATACCACATTTTCGATCCCTGTAAATGATCCACATCAG                         GTCTGGAATTCTAATGAGCACGAAGATTTGCAAGTTCTTGTGATCCTATCG
genomic: CTGTCTTTCAGAATACCACATTTTCGATCCCTGTAAATGATCCACATCAGgtaaaagaga ... tttcttgcagGTCTGGAATTCTAATGAGCACGAAGATTTGCAAGTTCTTGTGATCATATCG
EST: gi|211516146|gb|FL164990.1|FL164990
EST:     CGTCTTTCAGAATACCACATTTTCGATCCCCTGTAAATGATC-ACATCAG                         GTCTGGAATTCT
genomic: TGTCTTTCAGAATACCACATTTTCGATCCC-TGTAAATGATCCACATCAGgtaaaagaga ... tttcttgcagGTCTGGAATTCT