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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATATATGAGGCCTTGGAGTTGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAGgttagttaaccagccaatttttcatttcagtcttaagggtataatactagctgtattttccatgcaattgcatgcaccatagtcattcatgcatccagtg...

Basic information

species Zea mays
transcript GRMZM2G064302_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G064302_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os06g04510.1 (Oryza sativa), 5'ss of exon 3
GGATATATGAGGCCTTGGAGTTGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAGgttagttaaccagccaatttttcatttcagtcttaagggtataatactagctgtattttccatgcaattgcatgcaccatagtcattca-tgcatccagtg----
| |||||||||||||||||||| || ||||||||||| || ||||||||||| ||||| || |||||||| | |   ||     ||||  |  | | ||| |  |||  ||| | || ||  |  | ||    |  ||    |||  | ||| |    |||   |     
GAATATATGAGGCCTTGGAGTTAAGAGATGGAGGATCCGACTATCTTGGCAAAGGTGTACTCAAGgttagcttattggc-----tttccctcgaatgttaggactattttacaatctataaataacttgttcgtttatattgcattttgattgagcagatcatatttcag

upper sequence: GRMZM2G064302_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os06g04510.2 (Oryza sativa), 5'ss of exon 1
-----------------------------------GGATATATGAGGCCTTGGAGTTGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAGgttagttaaccagccaatttttcatttcagtcttaagggtataatactagctgtattttccatgcaattgcatgcaccatagtcattca-tgcatccagtg----
                                   | |||||||||||||||||||| || ||||||||||| || ||||||||||| ||||| || |||||||| | |   ||     ||||  |  | | ||| |  |||  ||| | || ||  |  | ||    |  ||    |||  | ||| |    |||   |     
TCATTAGATTTTTCTGTTTCCTGCTTTGACTGTAGGAATATATGAGGCCTTGGAGTTAAGAGATGGAGGATCCGACTATCTTGGCAAAGGTGTACTCAAGgttagcttattggc-----tttccctcgaatgttaggactattttacaatctataaataacttgttcgtttatattgcattttgattgagcagatcatatttcag

upper sequence: GRMZM2G064302_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA16G32960.1 (Glycine max), 5'ss of exon 3
GGATATATGAGGCCTTGGAGTTGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAGgttagttaaccagccaatttttcatttcagtcttaagggtataatactagctgtattttccatgcaattgcatgcaccatagtcattcatgcatccagtg------
|  | |||||||| ||||| |||||||||||||| || || || || || || ||||||||||||||  | |       |  |||  ||||| ||| ||     | |  |  | | | | |||   |||   | |     |  | |    |||||   | |  ||      
GTGTTTATGAGGCTTTGGAATTGAGGGATGGAGGCTCAGACTACCTCGGGAAAGGTGTTCTTAAGgt--gcttgatgttccctttaccattttagttttt----ttttgttttcgatttttttgtgatgtgttggagctgatgacaagatttcatatttgccttggattag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31354199|gb|CD438556.1|CD438556
EST:     TGGAGTTGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAG                         GCTGTCAGCAACGTAAACAACATTATTGGACCAGCGATTGTTGGAAAG
genomic: TGGAGTTGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAGgttagttaac ... cttttgctagGCTGTCAGCAATGTAAATAACATTATTGGACCAGCAATTGTTGGAAAG
EST: gi|33101954|gb|CF061914.1|CF061914
EST:     TGGAGTTGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAG                         GCTGTCAGCAATGTAAATAACATTATTGGACCAGCAATTGTTGGAAAG
genomic: TGGAGTTGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAGgttagttaac ... cttttgctagGCTGTCAGCAATGTAAATAACATTATTGGACCAGCAATTGTTGGAAAG
EST: gi|148946585|gb|EC890118.2|EC890118
EST:     TGGAGTTGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAG                         GCTGTCAGCAATGTAAATAACATTATTGGACCAGCAATTGTTGGAAAG
genomic: TGGAGTTGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAGgttagttaac ... cttttgctagGCTGTCAGCAATGTAAATAACATTATTGGACCAGCAATTGTTGGAAAG
EST: gi|67024719|gb|CO453468.1|CO453468
EST:     TGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAG                         GCTGTCATTAATGTCAAATAACATTATTGGACCAGCGATTGTTGGAAAG
genomic: TGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAGgttagttaac ... cttttgctagGCTGTCAGCAATGT-AAATAACATTATTGGACCAGCAATTGTTGGAAAG
EST: gi|67013116|gb|CO441865.1|CO441865
EST:     TGGAGTTGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAG                         GCTGTCAGCAATGTAAATAACATTATTGGACCAGCGATTGTTGGAAAG
genomic: TGGAGTTGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAGgttagttaac ... cttttgctagGCTGTCAGCAATGTAAATAACATTATTGGACCAGCAATTGTTGGAAAG
EST: gi|32920889|gb|CF025701.1|CF025701
EST:     TGGAGTTGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAG                         GCTGTCAGCAATGTAAATAACATTATTGGACCAGCAATTGTTGGAAAG
genomic: TGGAGTTGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAGgttagttaac ... cttttgctagGCTGTCAGCAATGTAAATAACATTATTGGACCAGCAATTGTTGGAAAG
EST: gi|161407677|gb|DW042395.1|DW042395
EST:     TGGAGTTGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAG                         GCTGTCAGCAATGTAAATAACATTATTGGACCAGCAATTGTTGGAAAG
genomic: TGGAGTTGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAGgttagttaac ... cttttgctagGCTGTCAGCAATGTAAATAACATTATTGGACCAGCAATTGTTGGAAAG
EST: gi|29130602|gb|CB381306.1|CB381306
EST:     TGGAGTTGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAG                         GCTGTCAGCAATGTAAATAACATTATTGGACCAGCAATTGTTGGAAAG
genomic: TGGAGTTGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAGgttagttaac ... cttttgctagGCTGTCAGCAATGTAAATAACATTATTGGACCAGCAATTGTTGGAAAG
EST: gi|31358889|gb|CD443246.1|CD443246
EST:     TGGAGTTGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAG                         GCTGTCAGCAACGTAAACAACATTATTGGACCAGCGATTGTTGGAAAG
genomic: TGGAGTTGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAGgttagttaac ... cttttgctagGCTGTCAGCAATGTAAATAACATTATTGGACCAGCAATTGTTGGAAAG
EST: gi|148986420|gb|EE030161.2|EE030161
EST:     TGGAGTTGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAG                         GCTGTCAGCAATGTAAATAACATTATTGGACCAGCAATTGTTGGAAAG
genomic: TGGAGTTGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAGgttagttaac ... cttttgctagGCTGTCAGCAATGTAAATAACATTATTGGACCAGCAATTGTTGGAAAG
EST: gi|211023765|gb|FL452149.1|FL452149
EST:     GCAAGGGTGTTCTTAAG                         GCTGTCAGCAACGTAAACAACATTATTGGACCAGCGATTGTTGGAAAG
genomic: GCAAGGGTGTTCTTAAGgttagttaac ... cttttgctagGCTGTCAGCAATGTAAATAACATTATTGGACCAGCAATTGTTGGAAAG
EST: gi|31364425|gb|CD448780.1|CD448780
EST:     TGGAGTTGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAG                         GCTGTCAGCAACGTAAACAACATTATTGGACCAGCGATTGTTGGAAAG
genomic: TGGAGTTGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAGgttagttaac ... cttttgctagGCTGTCAGCAATGTAAATAACATTATTGGACCAGCAATTGTTGGAAAG
EST: gi|67016127|gb|CO444876.1|CO444876
EST:     TGGAGTTGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAG                         GCTGTCAGCAATGTAAATAACATTATTGGACCAGCGATTGTTGGAAAG
genomic: TGGAGTTGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAGgttagttaac ... cttttgctagGCTGTCAGCAATGTAAATAACATTATTGGACCAGCAATTGTTGGAAAG
EST: gi|37385854|gb|CF630092.1|CF630092
EST:     TGGAGTTGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAG                         GCTGTCAGCAATGTAAATAACATTATTGGACCAGCAATTGTTGGAAAG
genomic: TGGAGTTGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAGgttagttaac ... cttttgctagGCTGTCAGCAATGTAAATAACATTATTGGACCAGCAATTGTTGGAAAG
EST: gi|31362399|gb|CD446756.1|CD446756
EST:     TGGAGTTGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAG                         GCTGTCAGCAACGTAAACAACATTATTGGACCAGCGATTGTTGGAAAG
genomic: TGGAGTTGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAGgttagttaac ... cttttgctagGCTGTCAGCAATGTAAATAACATTATTGGACCAGCAATTGTTGGAAAG
EST: gi|67019052|gb|CO447801.1|CO447801
EST:     TGGAGTTGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAG                         GCTGTCAGCAATGTAAATAACATTATTGGACCAGCGATTGTTGGAAAG
genomic: TGGAGTTGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAGgttagttaac ... cttttgctagGCTGTCAGCAATGTAAATAACATTATTGGACCAGCAATTGTTGGAAAG
EST: gi|31353289|gb|CD437646.1|CD437646
EST:     TGGAGTTGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAG                         GCTGTCAGCAACGTAAACAACATTATTGGACCAGCGATTGTTGGAAAG
genomic: TGGAGTTGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAGgttagttaac ... cttttgctagGCTGTCAGCAATGTAAATAACATTATTGGACCAGCAATTGTTGGAAAG
EST: gi|22819039|gb|BU499129.1|BU499129
EST:     TGGAGTTGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAG                         GCTGTCAGCAATGTAAATAACATTATTGGACCAGCAATTGTTGGAAAG
genomic: TGGAGTTGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAGgttagttaac ... cttttgctagGCTGTCAGCAATGTAAATAACATTATTGGACCAGCAATTGTTGGAAAG
EST: gi|32921440|gb|CF026252.1|CF026252
EST:     TGGAGTTGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAG                         GCTGTCAGCAATGTAAATAACATTATTGGACCAGCAATTGTTGGAAAG
genomic: TGGAGTTGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAGgttagttaac ... cttttgctagGCTGTCAGCAATGTAAATAACATTATTGGACCAGCAATTGTTGGAAAG
EST: gi|21760297|gb|BQ635838.1|BQ635838
EST:     GGAGTTGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAG                         GCTGTCAGCAATGTAAATAACATTATTGGACCAGCAATTGTTGGAAAG
genomic: GGAGTTGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAGgttagttaac ... cttttgctagGCTGTCAGCAATGTAAATAACATTATTGGACCAGCAATTGTTGGAAAG
EST: gi|31353228|gb|CD437585.1|CD437585
EST:     TGGAGTTGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAG                         GCTGTCAGCAACGTAAACAACATTATTGGACCAGCGATTGTTGGAAAG
genomic: TGGAGTTGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAGgttagttaac ... cttttgctagGCTGTCAGCAATGTAAATAACATTATTGGACCAGCAATTGTTGGAAAG
EST: gi|67013023|gb|CO441772.1|CO441772
EST:     TGGAGTTGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAG                         GCTGTCAGCAATGTAAATAACATTATTGGACCAGCGATTGTTGGAAAG
genomic: TGGAGTTGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAGgttagttaac ... cttttgctagGCTGTCAGCAATGTAAATAACATTATTGGACCAGCAATTGTTGGAAAG
EST: gi|33101016|gb|CF060976.1|CF060976
EST:     TGGAGTTGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAG                         GCTGTCAGCAATGTAAATAACATTATTGGACCAGCAATTGTTGGAAAG
genomic: TGGAGTTGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAGgttagttaac ... cttttgctagGCTGTCAGCAATGTAAATAACATTATTGGACCAGCAATTGTTGGAAAG
EST: gi|67026148|gb|CO454897.1|CO454897
EST:     TGGAGTTGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAG                         GCTGTCAGCAATGTAAATAACATTATTGGACCAGCGATTGTTGGAAAG
genomic: TGGAGTTGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAGgttagttaac ... cttttgctagGCTGTCAGCAATGTAAATAACATTATTGGACCAGCAATTGTTGGAAAG
EST: gi|148936670|gb|EC880797.2|EC880797
EST:     TGGAGTTGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAG                         GCTGTCAGCAATGTAAATAACATTATTGGACCAGCAATTGTTGGAAAG
genomic: TGGAGTTGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAGgttagttaac ... cttttgctagGCTGTCAGCAATGTAAATAACATTATTGGACCAGCAATTGTTGGAAAG
EST: gi|149010075|gb|EE041882.2|EE041882
EST:     TGGAGTTGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAG                         GCTGTCAGCAATGTAAATAACATTATTGGACCAGCAATTGTTGGAAAG
genomic: TGGAGTTGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAGgttagttaac ... cttttgctagGCTGTCAGCAATGTAAATAACATTATTGGACCAGCAATTGTTGGAAAG
EST: gi|33100819|gb|CF060779.1|CF060779
EST:     TGGAGTTGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAG                         GCTGTCAGCAATGTAAATAACATTATTGGACCAGCAATTGTTGGAAAG
genomic: TGGAGTTGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAGgttagttaac ... cttttgctagGCTGTCAGCAATGTAAATAACATTATTGGACCAGCAATTGTTGGAAAG
EST: gi|5555512|gb|AI881463.1|AI881463
EST:     TGGAGTTGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAG                         GCTGTCAGCAATGTAAATAACATTATTGGACCAGCAATTGTTGGAAAG
genomic: TGGAGTTGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAGgttagttaac ... cttttgctagGCTGTCAGCAATGTAAATAACATTATTGGACCAGCAATTGTTGGAAAG
EST: gi|149075538|gb|EE164069.2|EE164069
EST:     TGGAGTTGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAG                         GCTGTCAGCAATGTAAATAACATTATTGGACCAGCAATTGTTGGAAAG
genomic: TGGAGTTGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAGgttagttaac ... cttttgctagGCTGTCAGCAATGTAAATAACATTATTGGACCAGCAATTGTTGGAAAG
EST: gi|149073301|gb|EE161594.2|EE161594
EST:     TGGAGTTGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAG                         GCTGTCAGCAATGTAAATAACATTATTGGACCAGCAATTGTTGGAAAG
genomic: TGGAGTTGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAGgttagttaac ... cttttgctagGCTGTCAGCAATGTAAATAACATTATTGGACCAGCAATTGTTGGAAAG
EST: gi|31361063|gb|CD445420.1|CD445420
EST:     TGGAGTTGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAG                         GCTGTCAGCAACGTAAACAACATTATTGGACCAGCGATTGTTGGAAAG
genomic: TGGAGTTGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAGgttagttaac ... cttttgctagGCTGTCAGCAATGTAAATAACATTATTGGACCAGCAATTGTTGGAAAG
EST: gi|24768145|gb|CA403274.1|CA403274
EST:     TGGAGTTGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAG                         GCTGTCAGCAACGTAAACAACATTATTGGACCAGCGATTGTTGGAAAG
genomic: TGGAGTTGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAGgttagttaac ... cttttgctagGCTGTCAGCAATGTAAATAACATTATTGGACCAGCAATTGTTGGAAAG
EST: gi|32933310|gb|CF038122.1|CF038122
EST:     TGGAGTTGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAG                         GCTGTCAGCAATGTAAATAACATTATTGGACCAGCAATTGTTGGAAAG
genomic: TGGAGTTGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAGgttagttaac ... cttttgctagGCTGTCAGCAATGTAAATAACATTATTGGACCAGCAATTGTTGGAAAG
EST: gi|148959969|gb|EE153208.2|EE153208
EST:     TGGAGTTGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAG                         GCTGTCAGCAATGTAAATAACATTATTGGACCAGCAATTGTTGGAAAG
genomic: TGGAGTTGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAGgttagttaac ... cttttgctagGCTGTCAGCAATGTAAATAACATTATTGGACCAGCAATTGTTGGAAAG
EST: gi|32920185|gb|CF024997.1|CF024997
EST:     TGGAGTTGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAG                         GCTGTCAGCAATGTAAATAACATTATTGGACCAGCAATTGTTGGAAAG
genomic: TGGAGTTGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAGgttagttaac ... cttttgctagGCTGTCAGCAATGTAAATAACATTATTGGACCAGCAATTGTTGGAAAG
EST: gi|21809501|gb|BQ667819.1|BQ667819
EST:     TGGAGTTGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAG                         GCTGTCAGCAATGTAAATAACATTATTGGACCAGCAATTGTTGGAAAG
genomic: TGGAGTTGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAGgttagttaac ... cttttgctagGCTGTCAGCAATGTAAATAACATTATTGGACCAGCAATTGTTGGAAAG
EST: gi|149095202|gb|EE180823.2|EE180823
EST:     TGGAGTTGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAG                         GCTGTCAGCAATGTAAATAACATTATTGGACCAGCAATTGTTGGAAAG
genomic: TGGAGTTGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAGgttagttaac ... cttttgctagGCTGTCAGCAATGTAAATAACATTATTGGACCAGCAATTGTTGGAAAG
EST: gi|6626414|gb|AW257946.1|AW257946
EST:     TGGAGTTGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAG                         GCTGTCAGCAATGTAAATAACATTATTGGACCAGCAATTGTTGGAAAG
genomic: TGGAGTTGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAGgttagttaac ... cttttgctagGCTGTCAGCAATGTAAATAACATTATTGGACCAGCAATTGTTGGAAAG
EST: gi|21331626|gb|BQ487007.1|BQ487007
EST:     TGGAGTTGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAG                         GCTGTCAGCAATGTAAATAACATTATTGGACCAGCAATTGTTGGAAAG
genomic: TGGAGTTGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAGgttagttaac ... cttttgctagGCTGTCAGCAATGTAAATAACATTATTGGACCAGCAATTGTTGGAAAG
EST: gi|32920242|gb|CF025054.1|CF025054
EST:     TGGAGTTGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAG                         GCTGTCAGCAATGTAAATAACATTATTGGACCAGCAATTGTTGGAAAG
genomic: TGGAGTTGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAGgttagttaac ... cttttgctagGCTGTCAGCAATGTAAATAACATTATTGGACCAGCAATTGTTGGAAAG
EST: gi|149098506|gb|EE184486.2|EE184486
EST:     TGGAGTTGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAG                         GCTGTCAGCAATGTAAATAACATTATTGGACCAGCAATTGTTGGAAAG
genomic: TGGAGTTGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAGgttagttaac ... cttttgctagGCTGTCAGCAATGTAAATAACATTATTGGACCAGCAATTGTTGGAAAG
EST: gi|31351789|gb|CD436146.1|CD436146
EST:     TGGAGTTGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAG                         GCTGTCAGCAACGTAAACAACATTATTGGACCAGCGATTGTTGGAAAG
genomic: TGGAGTTGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAGgttagttaac ... cttttgctagGCTGTCAGCAATGTAAATAACATTATTGGACCAGCAATTGTTGGAAAG
EST: gi|60339638|gb|DN206611.1|DN206611
EST:     TGGAGTTGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAG                         GCTGTCAGCAACGTAAACAACATTATTGGACCAGCGATTGTTGGAAAG
genomic: TGGAGTTGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAGgttagttaac ... cttttgctagGCTGTCAGCAATGTAAATAACATTATTGGACCAGCAATTGTTGGAAAG
EST: gi|148941883|gb|EC886864.2|EC886864
EST:     TGGAGTTGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAG                         GCTGTCAGCAATGTAAATAACATTATTGGACCAGCAATTGTTGGAAAG
genomic: TGGAGTTGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAGgttagttaac ... cttttgctagGCTGTCAGCAATGTAAATAACATTATTGGACCAGCAATTGTTGGAAAG
EST: gi|78079386|gb|DV507798.1|DV507798
EST:     TGGAGTTGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAG                         GCTGTCAGCAATGTAAATAACATTATTGGACCAGCAATTGTTGGAAAG
genomic: TGGAGTTGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAGgttagttaac ... cttttgctagGCTGTCAGCAATGTAAATAACATTATTGGACCAGCAATTGTTGGAAAG
EST: gi|78107645|gb|DV526063.1|DV526063
EST:     TGGAGTTGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAG                         GCTGTCAGCAATGTAAATAACATTATTGGACCAGCAATTGTTGGAAAG
genomic: TGGAGTTGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAGgttagttaac ... cttttgctagGCTGTCAGCAATGTAAATAACATTATTGGACCAGCAATTGTTGGAAAG
EST: gi|67016450|gb|CO445199.1|CO445199
EST:     TGGAGTTGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAG                         GCTGTCAGCAATGTAAATAACATTATTGGACCAGCGATTGTTGGAAAG
genomic: TGGAGTTGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAGgttagttaac ... cttttgctagGCTGTCAGCAATGTAAATAACATTATTGGACCAGCAATTGTTGGAAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGATATATGAGGCCTTGGAGTTGAGGGATGGAGGATCTGATTATCTTGGCAAGGGTGTTCTTAAGgttagttaaccagccaatttttcatttcagtcttaagggtataatactagctgtattttccatgcaattgcatgcaccatagtcattcatgcatccagtg

- - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - - GAGGAT