Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACATCAAGCTGCTGGACCAGAGCTAGTGCAAGCATGCCGGAAAGTTCCAGAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCCgttagtacttcgtacctatctattcactttgattgtttcataagtcggaatgttcaaacctaaaatttatgtatcctttacacatccctttgcccaatattcgatgtgagcag

Basic information

species Zea mays
transcript GRMZM2G062425_T03
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G062425_T03 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os03g21830.1 (Oryza sativa), 5'ss of exon 3
TACATCAAGCTGCTGGACCAGAGCTAGTGCAAGCATGCCGGAAAGTTCCAGAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCCgttagtacttcgtacctatctattcactttgattgtttcataagtcggaatgttcaaacctaaaatttatgtatcctttacacatccctttgccca-atattcgatgtgagcag
|||||| | |||||||||| || || ||  | |||||||| |||||||||||||||||| | ||||| || || || ||||||||||||||||||||||||||||| | |  | |||   || ||| | ||| || |       || |||||       || ||    |  ||||  |     ||  | || ||   || ||  |||||| |||
TACATCGAACTGCTGGACCTGAACTCGTAGAGGCATGCCGTAAAGTTCCAGAGGTCAAATCTGGAGTTCGCTGCCCCACTGGAGAAGCTAGGATTACTCCgttagtgcctt-tccct---taatcaatctgactgatg---gcatcagaatgccatcttctgaacaccacatatctct-----atatcattacctgtatgttgaatgtgaacag

upper sequence: GRMZM2G062425_T03 (Zea mays), 5'ss of exon 3
lower sequence: AT2G40600.1 (Arabidopsis thaliana), 5'ss of exon 3
TACATCAAGCTGCTGGACCAGAGCTAGTGCAAGCATGCCGGAAAGTTCCAGAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCCgttagtacttcgtacctatctattcactttgattgtttcataagtcggaat-gttcaaacctaaaatttatgtatcctttacacatccctttgcccaatattcgatgtgagcag
|||||  ||||||||| ||| | ||       ||||||    | ||||| || ||    || |||||||||||||| ||||||||||| || |||||||||| ||       ||||  | | || |||    |       ||  | |   | |||  ||  |   |||  ||  |  |    | | |  || |    | |    ||  || |||
TACATAGAGCTGCTGGGCCACAACTCAGAGCTGCATGCTATGAGGTTCCTGAAGTTCGTCCTGGAGTCCGTTGTCCAACTGGAGAAGCAAGAATTACTCCgtgagat-----taccctttttttaactcgtgtataaatgtagattgaggtagtttgaaattggtattgttgagtgat--ggaaaccagttggattgaaa---aattggaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211488224|gb|FL180862.1|FL180862
EST:     GAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCC                         TGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
genomic: GAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCCgttagtactt ... atgtgagcagTGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
EST: gi|211499768|gb|FL180921.1|FL180921
EST:     GAGGTCAAACCAGGAGTTCGTTGTCCTACTGGAGAAGCTAGGATTACTCC                         TGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
genomic: GAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCCgttagtactt ... atgtgagcagTGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
EST: gi|211493987|gb|FL180886.1|FL180886
EST:     GAGGTCAAACCAGGAGTTCGTTGTCCTACTGGAGAAGCTAGGATTACTCC                         TGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGKTGGCCCTATATA
genomic: GAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCCgttagtactt ... atgtgagcagTGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
EST: gi|211493991|gb|FL180890.1|FL180890
EST:     GAGGTCAAACCAGGAGTTCGTTGTCCTACTGGAGAAGCTAGGATTACTCC                         TGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
genomic: GAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCCgttagtactt ... atgtgagcagTGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
EST: gi|211499771|gb|FL180924.1|FL180924
EST:     GAGGTCAAACCAGGAGTTCGTTGTCCTACTGGAGAAGCTAGGATTACTCC                         TGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
genomic: GAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCCgttagtactt ... atgtgagcagTGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
EST: gi|211309014|gb|FL381286.1|FL381286
EST:     GAGGTCAAACCAGGAGTTCGTTGTCCTACTGGAGAAGCTAGGATTACTCC                         TGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
genomic: GAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCCgttagtactt ... atgtgagcagTGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
EST: gi|211493989|gb|FL180888.1|FL180888
EST:     GAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCC                         TGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
genomic: GAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCCgttagtactt ... atgtgagcagTGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
EST: gi|211488231|gb|FL180869.1|FL180869
EST:     AGGTCAAACCAGGAGTTCGTTGTCCTACTGGAGAAGCTTAGGATTACTCC                         TGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
genomic: AGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCT-AGGATTACTCCgttagtactt ... atgtgagcagTGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
EST: gi|211485341|gb|FL180850.1|FL180850
EST:     GAGGTCAAACCAGGAGTTCGTTGTCCTACTGGAGAAGCTAGGATTACTCC                         TGCTTTTGAGCTTCCTGCCTCTCGGGTGAT
genomic: GAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCCgttagtactt ... atgtgagcagTGCTTTTGAGCTTCCTGCCTCTCGGGTGAT
EST: gi|211066115|gb|FL180931.1|FL180931
EST:     GAGGTCAAACCAGGAGTTCGTTGTCCTACTGGAGAAGCTAGGATTACTCC                         TGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
genomic: GAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCCgttagtactt ... atgtgagcagTGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
EST: gi|211066122|gb|FL180938.1|FL180938
EST:     GAGGTCAAACCAGGAGTTCGTTGTCCTACTGGAGAAGCTAGGATTACTCC                         TGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
genomic: GAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCCgttagtactt ... atgtgagcagTGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
EST: gi|211312231|gb|FK994146.1|FK994146
EST:     GAGGTCAAACCAGGAGTTCGTTGTCCTACTGGAGAAGCTAGGATTACTCC                         TGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
genomic: GAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCCgttagtactt ... atgtgagcagTGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
EST: gi|211491112|gb|FL180881.1|FL180881
EST:     GAGGTCAAACCAGGAGTTCGTTGTCCTACTGGAGAAGCTAGGATTACTCC                         TGCTTTTGAGCCTTCCTGCCTCTCGGGTGATTCACACTGTT
genomic: GAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCCgttagtactt ... atgtgagcagTGCTTTTGAGC-TTCCTGCCTCTCGGGTGATTCACACTGTT
EST: gi|211499777|gb|FL180930.1|FL180930
EST:     GAGGTCAAACCAGGAGTTCGTTGTCCTACTGGAGAAGCTAGGATTACTCC                         TGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTTGTTGGCCCTATAT
genomic: GAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCCgttagtactt ... atgtgagcagTGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACT-GTTGGCCCTATAT
EST: gi|211499763|gb|FL180916.1|FL180916
EST:     GAGGTCAAACCAGGAGTTCGTTGTCCTACTGGAGAAGCTAGGATTACTCC                         TGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
genomic: GAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCCgttagtactt ... atgtgagcagTGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
EST: gi|211499776|gb|FL180929.1|FL180929
EST:     GAGGTCAAACCAGGAGTTCGTTGTCCTACTGGAGAAGCTAGGATTACTCC                         TGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
genomic: GAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCCgttagtactt ... atgtgagcagTGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
EST: gi|211499770|gb|FL180923.1|FL180923
EST:     GAGGTCAAACCAGGAGTTCGTTGTCCTACTGGAGAAGCTAGGATTACTCC                         TGGCTTTTGAGCTTCCTGCCTCTCGGGTGATTC
genomic: GAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCCgttagtactt ... atgtgagcagTG-CTTTTGAGCTTCCTGCCTCTCGGGTGATTC
EST: gi|211214235|gb|FL024779.1|FL024779
EST:     GAGGTCAAACCAGGAGTTCGTTGTCCTACTGGAGAAGCTAGGATTACTCC                         TGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
genomic: GAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCCgttagtactt ... atgtgagcagTGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
EST: gi|211491105|gb|FL180874.1|FL180874
EST:     GAGGTCAAACCAGGAGTTCGTTGTCCTACTGGAGAAGCTAGGATTACTCC                         TGCTTTTGAGCTTCCTGSCTCTCGGGTGATTCACACTGTTGGCCCTATATA
genomic: GAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCCgttagtactt ... atgtgagcagTGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
EST: gi|211066127|gb|FL180943.1|FL180943
EST:     GAGGTCAAACCAGGAGTTCGTTGTCCTACTGGAGAAGCTAGGATTACTCC                         TGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCCTATAT
genomic: GAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCCgttagtactt ... atgtgagcagTGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCC-TATAT
EST: gi|211485339|gb|FL180848.1|FL180848
EST:     GAGGTCAAACCAGGAGTTCGTTGTCCTACTGGAGAAGCTAGGATTACTCC                         TGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
genomic: GAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCCgttagtactt ... atgtgagcagTGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
EST: gi|211488226|gb|FL180864.1|FL180864
EST:     GAGGTCAAACCAGGAGTTCGTTGTCCTACTGGAGAAGCTAGGATTACTCC                         TGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
genomic: GAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCCgttagtactt ... atgtgagcagTGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
EST: gi|32915279|gb|CF020091.1|CF020091
EST:     GAGGTCAAACCAGGAGTTCGTTGTCCTACTGGAGAAGCTAGGATTACTCC                         TGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
genomic: GAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCCgttagtactt ... atgtgagcagTGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
EST: gi|211066121|gb|FL180937.1|FL180937
EST:     GAGGTCAAACCAGGAGTTCGTTGTCCTACTGGAGAAGCTAGGATTACTCC                         TGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
genomic: GAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCCgttagtactt ... atgtgagcagTGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
EST: gi|211491103|gb|FL180872.1|FL180872
EST:     GAGGTCAAACCAGGAGTTCGTTGTCCTACTGGAGAAGCTAGGATTACTCC                         TGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCC-TATATA
genomic: GAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCCgttagtactt ... atgtgagcagTGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
EST: gi|211500169|gb|FL426487.1|FL426487
EST:     GAGGTCAAACCAGGAGTTCGTTGTCCTACTGGAGAAGCTAGGATTACTCC                         TGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
genomic: GAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCCgttagtactt ... atgtgagcagTGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
EST: gi|211493997|gb|FL180896.1|FL180896
EST:     GAGGTCAAACCAGGAGTTCGTTGTCCTACTGGAGAAGCTAGGATTACTCC                         TGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTATTGGCCCTATATA
genomic: GAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCCgttagtactt ... atgtgagcagTGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
EST: gi|211496890|gb|FL180913.1|FL180913
EST:     GAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCC                         TGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
genomic: GAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCCgttagtactt ... atgtgagcagTGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
EST: gi|211496888|gb|FL180911.1|FL180911
EST:     GAGGTCAAACCAGGAGTTCGTTGTCCTACTGGAGAAGCTAGGATTACTCC                         TGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTT
genomic: GAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCCgttagtactt ... atgtgagcagTGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTT
EST: gi|211350576|gb|FL379662.1|FL379662
EST:     GAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCC                         TGCTTTTGAGCTTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATAT
genomic: GAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCCgttagtactt ... atgtgagcagTGCTTTTGAGCTT-CCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATAT
EST: gi|211493995|gb|FL180894.1|FL180894
EST:     GAGGTCAAACCAGGAGTTCGTTGTCCTACTGGAGAAGCTAGGATTACTCC                         TGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
genomic: GAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCCgttagtactt ... atgtgagcagTGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
EST: gi|211214236|gb|FL024780.1|FL024780
EST:     GAGGTCAAACCAGGAGTTCGTTGTCCTACTGGAGAAGCTAGGATTACTCC                         TGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
genomic: GAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCCgttagtactt ... atgtgagcagTGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
EST: gi|20208314|gb|BQ134403.1|BQ134403
EST:     GAGGTCAAACCAGGAGTTCGTTGTCCTACTGGAGAAGCTAGGATTACTCC                         TGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
genomic: GAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCCgttagtactt ... atgtgagcagTGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
EST: gi|211493988|gb|FL180887.1|FL180887
EST:     GAGGTCAAACCAGGAGTTCGTTGTCCTACTGGAGAAGCTAGGATTACTCC                         TGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
genomic: GAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCCgttagtactt ... atgtgagcagTGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
EST: gi|211207798|gb|FL424436.1|FL424436
EST:     GAGGTCAAACCAGGAGTTCGTTGTCCTACTGGAGAAGCTAGGATTACTCC                         TGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
genomic: GAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCCgttagtactt ... atgtgagcagTGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
EST: gi|211494000|gb|FL180899.1|FL180899
EST:     GAGGTCAAACCAGGAGTTCGTTGTCCTACTGGAGAAGCTAGGATTACTCC                         TGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
genomic: GAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCCgttagtactt ... atgtgagcagTGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
EST: gi|211488230|gb|FL180868.1|FL180868
EST:     GAGGTCAAACCAGGAGTTCGTTGTCCTACTGGAGAAGCTAGGATTACTCC                         TGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCCACACTGTTGGCCCTATAT
genomic: GAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCCgttagtactt ... atgtgagcagTGCTTTTGAGCTTCCTGCCTCTCGGGTGATTC-ACACTGTTGGCCCTATAT
EST: gi|211496883|gb|FL180906.1|FL180906
EST:     GAGGTCAAACCAGGAGTTCGTTGTCCTACTGGAGAAGCTAGGATTACTCC                         TGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
genomic: GAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCCgttagtactt ... atgtgagcagTGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
EST: gi|211066126|gb|FL180942.1|FL180942
EST:     GAGGTCAAACCAGGAGTTCGTTGTCCTACTGGAGAAGCTAGGATTACTCC                         TGSTTTTGAGCTWCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
genomic: GAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCCgttagtactt ... atgtgagcagTGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
EST: gi|211034222|gb|FL370386.1|FL370386
EST:     GAGGTCAAACCAGGAGTTCGTTGTCCTACTGGAGAAGCTAGGATTACTCC                         TGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
genomic: GAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCCgttagtactt ... atgtgagcagTGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
EST: gi|211491102|gb|FL180871.1|FL180871
EST:     GAGGTCAAACCAGGAGTTCGTTGTCCTACTGGAGAAGCTAGGATTACTCC                         TGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
genomic: GAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCCgttagtactt ... atgtgagcagTGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
EST: gi|211496881|gb|FL180904.1|FL180904
EST:     GAGGTCAAACCAGGAGTTCGTTGTCCTACTGGAGAAGCTAGGATTACTCC                         TGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
genomic: GAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCCgttagtactt ... atgtgagcagTGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
EST: gi|20803361|gb|BQ294411.1|BQ294411
EST:     GAGGTCAAACCAGGAGTTCGTTGTCCTACTGGAGAAGCTAGGATTACTCC                         TGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
genomic: GAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCCgttagtactt ... atgtgagcagTGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
EST: gi|211491116|gb|FL180885.1|FL180885
EST:     GAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCC                         TGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
genomic: GAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCCgttagtactt ... atgtgagcagTGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
EST: gi|211070640|gb|FL369043.1|FL369043
EST:     GAGGTCAAACCAGGAGTTCGTTGTCCTACTGGNGAAGCTAGGATTACTCC                         TGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
genomic: GAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCCgttagtactt ... atgtgagcagTGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
EST: gi|211329865|gb|FL380475.1|FL380475
EST:     GAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCC                         TGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
genomic: GAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCCgttagtactt ... atgtgagcagTGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
EST: gi|211496884|gb|FL180907.1|FL180907
EST:     GAGGTCAAACCAGGAGTTCGTTGTCCTACTGGAGAAGCTAGGATTACTCC                         TGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACT
genomic: GAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCCgttagtactt ... atgtgagcagTGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TACATCAAGCTGCTGGACCAGAGCTAGTGCAAGCATGCCGGAAAGTTCCAGAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCCgttagtacttcgtacctatctattcactttgattgtttcataagtcggaatgttcaaacctaaaatttatgtatcctttacacatccctttgcccaatattcgatgtgagcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC