Sequence
atgc intronic sequence ATGC exonic sequenceCGCATTTTGCATAGAGCAAAGTCATTGACAATATCAACTTCCGTAACTTTCTGGAGCTGGTGCCTGAAGTAAGGGAGCTGGTTAATGATTTTTATGCAAGgtataatgctatcagattagccttgtgtatcattgacaatcgctatcatatcagtgttgttgattattgcacttatcttgtggtaaacagtgcagccgtg...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G062210_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os03g02540.1 (Oryza sativa), 5'ss of exon 4
CGCATTTTGCATAGAGCAAAGTCATTGACAATATCAACTTCCGTAACTTTCTGGAGCTGGTGCCTGAAGTAAGGGAGCTGGTTAATGATTTTTATGCAAGgtataat-gctatcagattagccttgtgtatcattgacaatcgctatcatatcagtgttgttgattattgcacttatcttgtggtaaacagtgcagccgtg
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--------------AGCAAAGTTATCGACAACAGTAATTTCCGAAACTTTCTGGAGCTGGTGCCTGAAGTGAGGGAACTTGTTAATGATTTCTATTCAAGgtaaagttgtagcttcatgtgttccagttagtactcagtgtaccgcataattagatataaacatgtgtatcgct-gtttttttataacatgttaaatgaaa
upper sequence: GRMZM2G062210_T02 (Zea mays), 5'ss of exon 3
lower sequence: AT3G61140.1 (Arabidopsis thaliana), 5'ss of exon 4
CGCATTTTGCATAGAGCAAAGTCATTGACAATATCAACTTCCGTAACTTTCTGGAGCTGGTGCCTGAAGTAAGGGAGCTGGTTAATGATTTTTATGCAAGgtataatgctatcag-attagccttgtgtatcattgacaatcgctatcatatcagtgttgttgattattgcacttatcttgtgg-taaacagtgcagccgtg
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--------------CAAAAAGTCATTGACAATATCAACTTCCGGAATTTCTTGGAGCTAGTGCCTGATGTGAGGGAACTTATCAACGATTTCTATTCAAGgttgcatattcttaccaagactctcgtctatttcttgca--tagcaccaaattactaaccttgaactaaggattattagtgtgaatacccactaagaccaga
upper sequence: GRMZM2G062210_T02 (Zea mays), 5'ss of exon 3
lower sequence: Vv15s0048g01980.t01 (Vitis vinifera), 5'ss of exon 4
CGCATTTTGCATAGAGCAAAGTCATTGACAATATCAACTTCCGTAACTTTCTGGAGCTGGTGCCTGAAGTAAGGGAGCTGGTTAATGATTTTTATGCAAGgta---taatgctatcagattagccttgtgtatcattgacaatcgctatcatatcagtgttgttgattattgcact-tatcttgtggtaaacagtgcagccgtg
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--------------AATAAAGTTATAGACAATCTCAACTTCCGGAACTTCTTAGAGTTAGTACCTGAAGTAAGGGAGCTTATTCATGATTTCTATTCAAGgtaactttatggtcttatgtgtgatctctgtgattttattagtctgccttatagctatctaatca--tgctgcacaatgttgtctggcattct-cctaatagc-
upper sequence: GRMZM2G062210_T02 (Zea mays), 5'ss of exon 3
lower sequence: PP1S31_338V6.1 (Physcomitrella patens), 5'ss of exon 4
CGCATTTTGCATAGAGCAAAGTCATTGACAATATCAACTTCCGTAACTTTCTGGAGCTGGTGCCTGAAGTAAGGGAGCTGGTTAATGATTTTTATGCAAGgtataatgcta--tcagattagccttgtgtatcattgacaatcgc-tatcata----tcagtgttgttgattattgcacttat-cttgtggtaaacagtgcagccgtg
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--------------AGTAAAGTGATTGACAACATCAACTTCCGCAATTTTTTGGAGCTTGTCCCTGAAGTGCGAGAGCTGATCCATGACTTTTATGCGAGgtatgagttttgttcagtaccaacttttacctctatataatttgcctattacaaagttttgatctgcggtctattgggtttccactcttaatgttcaata--------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32866164|gb|CF005846.1|CF005846EST: TGGATTCT-GTGCCTGAAGTAAGGGAGCTGGTTAATGATTTTTATGCAAG CATGTAGAGACTCTGTATATGGAGATTCGCCACAAAGCGATCATACAGTAC
genomic: TGGA-GCTGGTGCCTGAAGTAAGGGAGCTGGTTAATGATTTTTATGCAAGgtataatgct ... tttgcatcagCATGTAGAGACTCTGTATATGGAGATTCGCCACAAAGCGATCATACAGTAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CGCATTTTGCATAGAGCAAAGTCATTGACAATATCAACTTCCGTAACTTTCTGGAGCTGGTGCCTGAAGTAAGGGAGCTGGTTAATGATTTTTATGCAAGgtataatgctatcagattagccttgtgtatcattgacaatcgctatcatatcagtgttgttgattattgcacttatcttgtggtaaacagtgcagccgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT