1 5' 3' | 2 5' 3' | 3 5' 3' |
CTGCTAGAAGATTAAGGCGTGGTCCCCATACTGAGTACATTATATCTCTTGATGCAGAGGACTTATCACAAGGGAGCAATTCATACATGGGAAAACTGAGgtgaggttcaataggattccagagttctcctgaatcttcttgtattagctctacttatgaattggttctgaaagtgatgtgttctggtgcaattaggtgg...
species | Zea mays |
transcript | GRMZM2G062154_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GATGCAGAGGACTTATCACAAGGGAGCAATTCATACATGGGAAAACTGAG ATCTGATTTCTGGGGGACAAACTTCAAAATATATEST: gi|19272436|gb|BM888692.1|BM888692
genomic: GATGCAGAGGACTTATCACAAGGGAGCAATTCATACATGGGAAAACTGAGgtgaggttca ... ccctgtttagATCTGATTTCTGGGGGACAAACTTCAAAATATAT
EST: GATGCAGAGGACTTATCACAAGGGAGCAATTCATACATGGGAAAACTGAG ATCTGATTTCTGGGGGACAAACTTCAAAATATATGATAGCAAGCCACCATAEST: gi|19058652|gb|BM737319.1|BM737319
genomic: GATGCAGAGGACTTATCACAAGGGAGCAATTCATACATGGGAAAACTGAGgtgaggttca ... ccctgtttagATCTGATTTCTGGGGGACAAACTTCAAAATATATGATAGCAAGCCACCATA
EST: GATGCAGAGGACTTATCACAAGGGAGCAATTCATACATGGGAAAACTGAG ATCTGATTTCTGGGGGACAAACTTCAAAATATATGATAGCAAGCCACCATAEST: gi|74244974|gb|DT652888.1|DT652888
genomic: GATGCAGAGGACTTATCACAAGGGAGCAATTCATACATGGGAAAACTGAGgtgaggttca ... ccctgtttagATCTGATTTCTGGGGGACAAACTTCAAAATATATGATAGCAAGCCACCATA
EST: GATGCAGAGGACTTATCACAAGGGAGCAATTCATACATGGGAAAACTGAG ATCTGATTTCTGGGGGACAAACTTCAAAATATATGATAGCAAGCCACCATAEST: gi|22490929|gb|BU050852.1|BU050852
genomic: GATGCAGAGGACTTATCACAAGGGAGCAATTCATACATGGGAAAACTGAGgtgaggttca ... ccctgtttagATCTGATTTCTGGGGGACAAACTTCAAAATATATGATAGCAAGCCACCATA
EST: GATGCAGAGGACTTATCACAAGGGAGCAATTCATACATGGGAAAACTGAG ATCTGATTTCTGGGGGACAAACTTCAAAATATATGATAGCAAGCCACCATAEST: gi|149040587|gb|EE046828.2|EE046828
genomic: GATGCAGAGGACTTATCACAAGGGAGCAATTCATACATGGGAAAACTGAGgtgaggttca ... ccctgtttagATCTGATTTCTGGGGGACAAACTTCAAAATATATGATAGCAAGCCACCATA
EST: GATGCAGAGGACTTATCACAAGGGAGCAATTCATACATGGGAAAACTGAG ATCTGATTTCTGGGGGACAAACTTCAAAATATATGATAGCAAGCCACCATAEST: gi|22490595|gb|BU050518.1|BU050518
genomic: GATGCAGAGGACTTATCACAAGGGAGCAATTCATACATGGGAAAACTGAGgtgaggttca ... ccctgtttagATCTGATTTCTGGGGGACAAACTTCAAAATATATGATAGCAAGCCACCATA
EST: GATGCAGAGGACTTATCACAAGGGAGCAATTCATACATGGGAAAACTGAG ATCTGATTTCTGGGGGACAAACTTCAAAATATATGATAGCAAGCCACCATAEST: gi|87152741|gb|DY397530.1|DY397530
genomic: GATGCAGAGGACTTATCACAAGGGAGCAATTCATACATGGGAAAACTGAGgtgaggttca ... ccctgtttagATCTGATTTCTGGGGGACAAACTTCAAAATATATGATAGCAAGCCACCATA
EST: GATGCAGAGGACTTATCACAAGGGAGCAATTCATACATGGGAAAACTGAG ATCTGATTTCTGGGGGACAAACTTCAAAATATATGATAGCAAGCCACCATAEST: gi|74239976|gb|DT647890.1|DT647890
genomic: GATGCAGAGGACTTATCACAAGGGAGCAATTCATACATGGGAAAACTGAGgtgaggttca ... ccctgtttagATCTGATTTCTGGGGGACAAACTTCAAAATATATGATAGCAAGCCACCATA
EST: GATGCAGAGGACTTATCACAAGGGAGCAATTCATACATGGGAAAACTGAG ATCTGATTTCTGGGGGACAAACTTCAAAATATATGATAGCAAGCCACCATAEST: gi|86466002|gb|DY232375.1|DY232375
genomic: GATGCAGAGGACTTATCACAAGGGAGCAATTCATACATGGGAAAACTGAGgtgaggttca ... ccctgtttagATCTGATTTCTGGGGGACAAACTTCAAAATATATGATAGCAAGCCACCATA
EST: GATGCAGAGGACTTATCACAAGGGAGCAATTCATACGTGGGAAAACTGAT ATCTGATTTCTGGGGGACAAACTTCAAAATATATGATAGCAAGCCACCATAEST: gi|71329294|gb|DR801349.1|DR801349
genomic: GATGCAGAGGACTTATCACAAGGGAGCAATTCATACATGGGAAAACTGAGgtgaggttca ... ccctgtttagATCTGATTTCTGGGGGACAAACTTCAAAATATATGATAGCAAGCCACCATA
EST: GATGCAGAGGACTTATCACAAGGGAGCAATTCATACATGGGAAAACTGAG ATCTGATTTCTGGGGGACAAACTTCAAAATATATGATAGCAAGCCACCATA
genomic: GATGCAGAGGACTTATCACAAGGGAGCAATTCATACATGGGAAAACTGAGgtgaggttca ... ccctgtttagATCTGATTTCTGGGGGACAAACTTCAAAATATATGATAGCAAGCCACCATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGCTAGAAGATTAAGGCGTGGTCCCCATACTGAGTACATTATATCTCTTGATGCAGAGGACTTATCACAAGGGAGCAATTCATACATGGGAAAACTGAGgtgaggttcaataggattccagagttctcctgaatcttcttgtattagctctacttatgaattggttctgaaagtgatgtgttctggtgcaattaggtgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA