Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAGgttggtggaatgaacgctgtatcaatatcagtttacgttgtggcttagtagtgacttgttcctttcttgctgtaactcatag

Basic information

species Zea mays
transcript GRMZM2G062076_T01
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60357821|gb|DN224794.1|DN224794
EST:     AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG                         GTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
genomic: AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAGgttggtggaa ... taactcatagGTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
EST: gi|60348926|gb|DN215899.1|DN215899
EST:     AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG                         GTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
genomic: AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAGgttggtggaa ... taactcatagGTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
EST: gi|22542576|gb|BU093014.1|BU093014
EST:     AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG                         GTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
genomic: AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAGgttggtggaa ... taactcatagGTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
EST: gi|9731495|gb|BE510247.1|BE510247
EST:     AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG                         GTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
genomic: AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAGgttggtggaa ... taactcatagGTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
EST: gi|211094642|gb|FL030914.1|FL030914
EST:     AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG                         GTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
genomic: AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAGgttggtggaa ... taactcatagGTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
EST: gi|19822011|gb|BQ048035.1|BQ048035
EST:     TGCCGAAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG                         GTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
genomic: TGCCGAAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAGgttggtggaa ... taactcatagGTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
EST: gi|149074288|gb|EE162665.2|EE162665
EST:     AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG                         GTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
genomic: AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAGgttggtggaa ... taactcatagGTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
EST: gi|14203855|gb|BG837532.1|BG837532
EST:     AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG                         GTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
genomic: AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAGgttggtggaa ... taactcatagGTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
EST: gi|4646735|gb|AI621810.1|AI621810
EST:     AAGAAAGAGACCGG-GGAAAAGCTCTAGCCATCTACTCTTAGAAG                         GTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
genomic: AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAGgttggtggaa ... taactcatagGTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
EST: gi|211079010|gb|FL148949.1|FL148949
EST:     AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG                         GTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
genomic: AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAGgttggtggaa ... taactcatagGTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
EST: gi|28987594|gb|CB351712.1|CB351712
EST:     AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG                         GTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
genomic: AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAGgttggtggaa ... taactcatagGTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
EST: gi|27522103|gb|CA989209.1|CA989209
EST:     AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG                         GTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
genomic: AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAGgttggtggaa ... taactcatagGTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
EST: gi|19770098|gb|BQ034819.1|BQ034819
EST:     AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG                         GGTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
genomic: AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAGgttggtggaa ... taactcatagGTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
EST: gi|22546523|gb|BU098834.1|BU098834
EST:     AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG                         GTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
genomic: AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAGgttggtggaa ... taactcatagGTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
EST: gi|60357589|gb|DN224562.1|DN224562
EST:     AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG                         GTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
genomic: AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAGgttggtggaa ... taactcatagGTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
EST: gi|211094641|gb|FL030913.1|FL030913
EST:     AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG                         GTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
genomic: AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAGgttggtggaa ... taactcatagGTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
EST: gi|71318075|gb|DR795799.1|DR795799
EST:     AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG                         GTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
genomic: AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAGgttggtggaa ... taactcatagGTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
EST: gi|211094644|gb|FL030916.1|FL030916
EST:     AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG                         GTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
genomic: AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAGgttggtggaa ... taactcatagGTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
EST: gi|4938781|gb|AI691189.1|AI691189
EST:     GCGG-AAAGCTCTAGCCATCT-CTCTTAGAAG                         GTTCAAAGAGAGAGCCAGAGGATAAGATAGTTCCCCGAGAAATCGATGCTG
genomic: GCGGAAAAGCTCTAGCCATCTACTCTTAGAAGgttggtggaa ... taactcatagGTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
EST: gi|60341620|gb|DN208593.1|DN208593
EST:     TCTAGCCATCTACTCTTAGAAG                         GTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
genomic: TCTAGCCATCTACTCTTAGAAGgttggtggaa ... taactcatagGTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
EST: gi|94479969|gb|EB708927.1|EB708927
EST:     AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG                         GTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
genomic: AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAGgttggtggaa ... taactcatagGTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
EST: gi|60357962|gb|DN224935.1|DN224935
EST:     AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG                         GTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
genomic: AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAGgttggtggaa ... taactcatagGTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
EST: gi|44901479|gb|CK828024.1|CK828024
EST:     AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG                         GTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
genomic: AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAGgttggtggaa ... taactcatagGTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
EST: gi|211079009|gb|FL148948.1|FL148948
EST:     AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG                         GTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
genomic: AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAGgttggtggaa ... taactcatagGTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
EST: gi|37391486|gb|CF632986.1|CF632986
EST:     AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG                         GTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
genomic: AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAGgttggtggaa ... taactcatagGTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
EST: gi|37397360|gb|CF635977.1|CF635977
EST:     GGAAAAGCTCTAGCCATCTACTCTTAGAAG                         GTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
genomic: GGAAAAGCTCTAGCCATCTACTCTTAGAAGgttggtggaa ... taactcatagGTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
EST: gi|67015842|gb|CO444591.1|CO444591
EST:     AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG                         GTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
genomic: AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAGgttggtggaa ... taactcatagGTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
EST: gi|211079019|gb|FL148958.1|FL148958
EST:     AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG                         GTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
genomic: AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAGgttggtggaa ... taactcatagGTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
EST: gi|19769787|gb|BQ034508.1|BQ034508
EST:     GGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG                         GTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
genomic: GGCGGAAAAGCTCTAGCCATCTACTCTTAGAAGgttggtggaa ... taactcatagGTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
EST: gi|40334927|gb|CK368997.1|CK368997
EST:     AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG                         GTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
genomic: AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAGgttggtggaa ... taactcatagGTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
EST: gi|71318073|gb|DR795798.1|DR795798
EST:     AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG                         GTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
genomic: AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAGgttggtggaa ... taactcatagGTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
EST: gi|28910213|gb|CB331325.1|CB331325
EST:     AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG                         GTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
genomic: AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAGgttggtggaa ... taactcatagGTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
EST: gi|60395043|gb|DN227912.1|DN227912
EST:     AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTATTTTTAGAAG                         GTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
genomic: AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAGgttggtggaa ... taactcatagGTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
EST: gi|211540431|gb|FL210072.1|FL210072
EST:     AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG                         GTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
genomic: AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAGgttggtggaa ... taactcatagGTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
EST: gi|60346299|gb|DN213272.1|DN213272
EST:     AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG                         GTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
genomic: AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAGgttggtggaa ... taactcatagGTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
EST: gi|161589996|gb|EY962018.1|EY962018
EST:     CGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG                         GTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
genomic: CGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAGgttggtggaa ... taactcatagGTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
EST: gi|60397411|gb|DN230227.1|DN230227
EST:     AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG                         GTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
genomic: AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAGgttggtggaa ... taactcatagGTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
EST: gi|60352503|gb|DN219476.1|DN219476
EST:     AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG                         GTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
genomic: AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAGgttggtggaa ... taactcatagGTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
EST: gi|211444750|gb|FL452517.1|FL452517
EST:     CATCTACTCTTAGAAAG                         GTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCT
genomic: CATCTACTCTTAG-AAGgttggtggaa ... taactcatagGTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCT
EST: gi|19822434|gb|BQ048458.1|BQ048458
EST:     AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG                         GTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
genomic: AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAGgttggtggaa ... taactcatagGTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
EST: gi|211079007|gb|FL148946.1|FL148946
EST:     AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG                         GTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
genomic: AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAGgttggtggaa ... taactcatagGTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
EST: gi|19770347|gb|BQ035068.1|BQ035068
EST:     AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG                         GTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
genomic: AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAGgttggtggaa ... taactcatagGTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
EST: gi|8367292|gb|BE050237.1|BE050237
EST:     AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG                         GTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
genomic: AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAGgttggtggaa ... taactcatagGTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
EST: gi|37393026|gb|CF633769.1|CF633769
EST:     AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG                         GTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
genomic: AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAGgttggtggaa ... taactcatagGTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
EST: gi|28568978|gb|CB280853.1|CB280853
EST:     AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG                         GGTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
genomic: AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAGgttggtggaa ... taactcatagGTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
EST: gi|22520729|gb|BU079540.1|BU079540
EST:     AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG                         GTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
genomic: AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAGgttggtggaa ... taactcatagGTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
EST: gi|9794824|gb|BE553132.1|BE553132
EST:     AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG                         GTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
genomic: AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAGgttggtggaa ... taactcatagGTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
EST: gi|21891526|gb|BQ744739.1|BQ744739
EST:     AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG                         GTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
genomic: AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAGgttggtggaa ... taactcatagGTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
EST: gi|9742832|gb|BE518980.1|BE518980
EST:     AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG                         GTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
genomic: AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAGgttggtggaa ... taactcatagGTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
EST: gi|22521454|gb|BU080265.1|BU080265
EST:     AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG                         GTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
genomic: AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAGgttggtggaa ... taactcatagGTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
EST: gi|148958811|gb|EE010417.2|EE010417
EST:     AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG                         GTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
genomic: AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAGgttggtggaa ... taactcatagGTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
EST: gi|40334706|gb|CK368776.1|CK368776
EST:     AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG                         GTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
genomic: AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAGgttggtggaa ... taactcatagGTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
EST: gi|28569026|gb|CB280901.1|CB280901
EST:     AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG                         GTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
genomic: AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAGgttggtggaa ... taactcatagGTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
EST: gi|211540429|gb|FL210070.1|FL210070
EST:     AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG                         GTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
genomic: AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAGgttggtggaa ... taactcatagGTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
EST: gi|211540435|gb|FL210076.1|FL210076
EST:     AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG                         GTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
genomic: AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAGgttggtggaa ... taactcatagGTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
EST: gi|6536578|gb|AW224891.1|AW224891
EST:     AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG                         GGTCAAAGAGAGAGACAGAGGATAA
genomic: AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAGgttggtggaa ... taactcatagGTTCAAAGAGAGAGACAGAGGATAA
EST: gi|60344935|gb|DN211908.1|DN211908
EST:     AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG                         GTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
genomic: AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAGgttggtggaa ... taactcatagGTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
EST: gi|211081741|gb|FL148961.1|FL148961
EST:     AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG                         GTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
genomic: AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAGgttggtggaa ... taactcatagGTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
EST: gi|211079006|gb|FL148945.1|FL148945
EST:     AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG                         GTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
genomic: AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAGgttggtggaa ... taactcatagGTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
EST: gi|211540434|gb|FL210075.1|FL210075
EST:     AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG                         GTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
genomic: AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAGgttggtggaa ... taactcatagGTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
EST: gi|148965262|gb|EC906100.2|EC906100
EST:     AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG                         GTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
genomic: AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAGgttggtggaa ... taactcatagGTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
EST: gi|24764934|gb|CA400095.1|CA400095
EST:     AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG                         GTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
genomic: AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAGgttggtggaa ... taactcatagGTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
EST: gi|211076273|gb|FL148942.1|FL148942
EST:     AAGAAAGAGACCGGCGGAAAAACTCTAGCCWTCTACTCTTAGAAG                         GTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
genomic: AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAGgttggtggaa ... taactcatagGTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
EST: gi|211079014|gb|FL148953.1|FL148953
EST:     AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG                         GTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
genomic: AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAGgttggtggaa ... taactcatagGTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
EST: gi|211276946|gb|FL388217.1|FL388217
EST:     AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG                         GTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
genomic: AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAGgttggtggaa ... taactcatagGTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
EST: gi|211076275|gb|FL148944.1|FL148944
EST:     AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG                         GTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
genomic: AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAGgttggtggaa ... taactcatagGTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
EST: gi|26457681|gb|CA829264.1|CA829264
EST:     AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG                         GTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
genomic: AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAGgttggtggaa ... taactcatagGTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
EST: gi|211514736|gb|FL212670.1|FL212670
EST:     AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG                         GTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
genomic: AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAGgttggtggaa ... taactcatagGTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
EST: gi|76015323|gb|DT942493.1|DT942493
EST:     AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG                         GTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
genomic: AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAGgttggtggaa ... taactcatagGTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
EST: gi|9794685|gb|BE552993.1|BE552993
EST:     AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG                         GTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
genomic: AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAGgttggtggaa ... taactcatagGTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
EST: gi|60394367|gb|DN227237.1|DN227237
EST:     AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG                         GTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
genomic: AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAGgttggtggaa ... taactcatagGTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
EST: gi|60349874|gb|DN216847.1|DN216847
EST:     AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG                         GTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
genomic: AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAGgttggtggaa ... taactcatagGTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
EST: gi|211453654|gb|FL478351.1|FL478351
EST:     AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAG                         GTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG
genomic: AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAGgttggtggaa ... taactcatagGTTCAAAGAGAGAGACAGAGGATAAGATAGTTCCACGAGAAATCGATGCTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAGAAAGAGACCGGCGGAAAAGCTCTAGCCATCTACTCTTAGAAGgttggtggaatgaacgctgtatcaatatcagtttacgttgtggcttagtagtgacttgttcctttcttgctgtaactcatag

- - AAGAGA