1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GACCGATGGATACGTGCGCGTCCGCGACCTGTTGAAGCTCAACCTTCAGACCTTCGCCAAGGCCCCTCTCAAGTCTCACACTGTTGACGAGATCAGGGAGgtatcgatgatactggttttatttcgttggttgattgattgatgaactgctgtcgaacttgttaggctacttgatttgtgctaaacgctgtttcttctca...
species | Zea mays |
transcript | GRMZM2G061783_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CCTTCGCCAAGGCCCCTCTCAAGTCTCACACTGTTGACGAGATCAGGGAG GCAGTCAGGCAGGACAACAAGCAGCGGTTTAGTCTGTTGGAGGAAGATGGCEST: gi|148954498|gb|EC899929.2|EC899929
genomic: CCTTCGCCAAGGCCCCTCTCAAGTCTCACACTGTTGACGAGATCAGGGAGgtatcgatga ... tggcgtgcagGCAGTCAGGCAGGACAACAAGCAGCGGTTTAGTCTGTTGGAGGAAGATGGC
EST: CCTTCGCCAAGGCCCCTCTCAAGTCTCACACTGTTGACGAGATCAGGGAG GCAGTCAGGCAGGACAACAAGCAGCGGTTTAGTCTGTTGGAGGAAGATGGCEST: gi|74234857|gb|DT642771.1|DT642771
genomic: CCTTCGCCAAGGCCCCTCTCAAGTCTCACACTGTTGACGAGATCAGGGAGgtatcgatga ... tggcgtgcagGCAGTCAGGCAGGACAACAAGCAGCGGTTTAGTCTGTTGGAGGAAGATGGC
EST: CCTTCGCCAAGGCCCCTCTCAAGTCTCACACTGTTGACGAGATCAGGGAG GCAGTCAGGCAGGACAACAAGCAGCGGTTTAGTCTGTTGGAGGAAGATGGC
genomic: CCTTCGCCAAGGCCCCTCTCAAGTCTCACACTGTTGACGAGATCAGGGAGgtatcgatga ... tggcgtgcagGCAGTCAGGCAGGACAACAAGCAGCGGTTTAGTCTGTTGGAGGAAGATGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACCGATGGATACGTGCGCGTCCGCGACCTGTTGAAGCTCAACCTTCAGACCTTCGCCAAGGCCCCTCTCAAGTCTCACACTGTTGACGAGATCAGGGAGgtatcgatgatactggttttatttcgttggttgattgattgatgaactgctgtcgaacttgttaggctacttgatttgtgctaaacgctgtttcttctca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA