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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAGgtattgtgaagctatgtcctcttgtgattgttcttttgaactcgtgtgacaattttttaggtactgtcctaagttacgagtgtgtaacttttcagccaac...

Basic information

species Zea mays
transcript GRMZM2G061745_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G061745_T03 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os04g56646.1 (Oryza sativa), 5'ss of exon 3
CCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAGgtattgtgaagctatgtcctcttgtgat-tgttcttttgaactcgtgtgacaattttttaggtactgtcctaagttacgagtgtgtaacttttcagccaac-
||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||| | || ||| ||||||| | |||| |||| |    |     || |    |||  | || |    ||   |   ||   ||| ||   |  |  | | | |||   |   | || |     | 
CCAAGGAGCATGTTGTTGGCTGGTACAGCACCGGTCCAAAACTCAGGGAGAACGACTTGGATATACACGCACTATTCAATAAgtat-gtgatgtaccgaagctttatatcctgtattgttcatgaagttatattcttgactagatatgttgttttggtgcaagta-atctttattaaattgtct

upper sequence: GRMZM2G061745_T03 (Zea mays), 5'ss of exon 3
lower sequence: AT5G05780.1 (Arabidopsis thaliana), 5'ss of exon 3
CCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAGgt-attgtgaagctatgtcctcttgtgattgttcttttgaactc----gtgtgacaattttttaggtactgtcctaagttacgagtgtgtaacttttcagccaac-----------------------------------------------------------------------------------
|||||||||||||||| || ||||||||||| ||||| |||||  | ||||| || |||||||| || || || |||||  ||| | | |  || |   || |   |  ||   |   |||  ||     |  |||  || || | | |  |    |  | ||    | ||    ||||  ||  |                                                                                    
CCAAGGAGCATGTTGTAGGTTGGTACAGCACAGGCCCTAAACTTCGAGAGAATGATTTGGATGTTCACGCGTTGTTCAATGGgttagtttccagtttaatcattcagatatcaattgattggcctttatggattgaggatcttctggttcttaaattgtgataaagatttg----ttttaggctgaaatctgtgtttctttcccactttacgttttttgtggcttcggtttcatctccaattaaggttcactttgcttttggttttgcag

upper sequence: GRMZM2G061745_T03 (Zea mays), 5'ss of exon 3
lower sequence: Vv02s0025g01490.t01 (Vitis vinifera), 5'ss of exon 3
CCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAGgta---ttgtgaagctatgtcctcttgtg-attgttcttttgaactcgtgtgacaattttttaggtactgtcct--aagttacgagtgtgtaacttttcagccaac
||||||||||||||||||| ||||| ||||| || ||||||||  ||||||| ||  | ||| | ||   | ||||| |   ||    |  | ||  | | | ||  |      |||  |  ||||      |   | | |   |   |||||  |  || | |   || ||| |   ||||      
CCAAGGAGCATGTTGTTGGTTGGTATAGCACAGGACCAAAACTGCGGGAGAATGATCTAGATATTCACAGACTATTCCATGAgtgagctcattaatttttattcttataaatgatgtgttaatgaaacttaatcttattctggaaaaaactgtttttcaactgatatgtttgtgaagcttca------

upper sequence: GRMZM2G061745_T03 (Zea mays), 5'ss of exon 3
lower sequence: EFJ23777 (Selaginella moellendorffii), 5'ss of exon 3
CCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAGgtattgtgaagctatgtcctcttgtgattgttcttttgaactcgtgtgacaattttttaggtactgtcctaagttacgagtgtgtaacttttcagccaac
| |||||||| |||||||| |||||||||||||| || |||||| | ||||||||  | ||  | || |   | ||    ||| | || |||  |   | ||||    ||| ||||| || | || | |     |  |||  ||  |  | |    ||| ||                    
CGAAGGAGCACGTTGTTGGATGGTACAGCACTGGTCCCAAACTACGTGAGAACGATCTTGACATTCACGAGCTCTT---TAGGAAgtgagaaatttgtttctct----atttttcttctggattc-tatcttgctcatttgtgtgattgctt---ctaccag--------------------

upper sequence: GRMZM2G061745_T03 (Zea mays), 5'ss of exon 3
lower sequence: EFJ21414 (Selaginella moellendorffii), 5'ss of exon 3
CCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAGgtattgtgaagctatgtcctcttgtgattgttcttttgaactcgtgtgacaattttttaggtactgtcctaagttacgagtgtgtaacttttcagccaac
| |||||||| |||||||| |||||||||||||| || |||||| | ||||||||  | ||  | || |   | ||    ||| | || |||  | |||     | |  || || ||||    | |     || || | |   |||       ||                           
CGAAGGAGCACGTTGTTGGATGGTACAGCACTGGTCCCAAACTACGTGAGAACGATCTTGACATTCACGAGCTCTT---TAGGAAgtgagaaattttgtttctctcttcttctttttttctgtttgc---tcatttgtgtgattacgtctaccag---------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|91048122|gb|EB158540.1|EB158540
EST:     GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAG                         TTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCAACCCAAGGAGCT
genomic: GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAGgtattgtgaa ... caaattgcagTTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCAACCCAAGGAGCT
EST: gi|211113175|gb|FL202691.1|FL202691
EST:     GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAG                         TTATGTTCCTAATCCAGTCTTGGTGATTTATTGATGTCCAACCCAAGGAGC
genomic: GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAGgtattgtgaa ... caaattgcagTTATGTTCCTAATCCAGTCTTGGTGATT-ATTGATGTCCAACCCAAGGAGC
EST: gi|211222278|gb|FL202724.1|FL202724
EST:     GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAG                         TTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCAACCCAAGGAGCT
genomic: GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAGgtattgtgaa ... caaattgcagTTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCAACCCAAGGAGCT
EST: gi|60348273|gb|DN215246.1|DN215246
EST:     GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAG                         TTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCAACCCAAGGAGCT
genomic: GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAGgtattgtgaa ... caaattgcagTTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCAACCCAAGGAGCT
EST: gi|20811186|gb|BQ295664.1|BQ295664
EST:     GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAG                         TTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCAACCCAAGGAGCT
genomic: GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAGgtattgtgaa ... caaattgcagTTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCAACCCAAGGAGCT
EST: gi|211222279|gb|FL202725.1|FL202725
EST:     GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAG                         TTATGTTCCTAATCCAGTCTTGGTGGATTATTGATGTCCAACCCAAGGAGC
genomic: GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAGgtattgtgaa ... caaattgcagTTATGTTCCTAATCCAGTCTTGGTG-ATTATTGATGTCCAACCCAAGGAGC
EST: gi|211385219|gb|FK956040.1|FK956040
EST:     GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAG                         TTATGTTCCTAATCCAGTCTTGGTGATTATTTATGTCCAACCCAAGGAGCT
genomic: GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAGgtattgtgaa ... caaattgcagTTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCAACCCAAGGAGCT
EST: gi|211220211|gb|FL202713.1|FL202713
EST:     GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAG                         TTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCAACCCAAGGAGCT
genomic: GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAGgtattgtgaa ... caaattgcagTTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCAACCCAAGGAGCT
EST: gi|149014660|gb|EE044326.2|EE044326
EST:     GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAG                         TTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCAACCCAAGGAGCT
genomic: GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAGgtattgtgaa ... caaattgcagTTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCAACCCAAGGAGCT
EST: gi|5901317|gb|AW042417.1|AW042417
EST:     GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAG                         TTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCAACCCAAGGAGCT
genomic: GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAGgtattgtgaa ... caaattgcagTTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCAACCCAAGGAGCT
EST: gi|148958380|gb|EC904610.2|EC904610
EST:     GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAG                         TTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCAACCCAAGGAGCT
genomic: GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAGgtattgtgaa ... caaattgcagTTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCAACCCAAGGAGCT
EST: gi|211222271|gb|FL202717.1|FL202717
EST:     GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAG                         TTATGTTCCCTAATCCAGTCTTGGTGA
genomic: GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAGgtattgtgaa ... caaattgcagTTATGTTCC-TAATCCAGTCTTGGTGA
EST: gi|211112249|gb|FL202670.1|FL202670
EST:     GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAG                         TTATGTTCCTAATCCAGTCTTGGTGATTATTGATGT
genomic: GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAGgtattgtgaa ... caaattgcagTTATGTTCCTAATCCAGTCTTGGTGATTATTGATGT
EST: gi|211110420|gb|FL202649.1|FL202649
EST:     GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAG                         TTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCAACCCAAGGAGCT
genomic: GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAGgtattgtgaa ... caaattgcagTTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCAACCCAAGGAGCT
EST: gi|211110421|gb|FL202650.1|FL202650
EST:     GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAG                         TTATGTTCCTAATCCAGTCTTGGTGATTATTGATGT
genomic: GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAGgtattgtgaa ... caaattgcagTTATGTTCCTAATCCAGTCTTGGTGATTATTGATGT
EST: gi|211110417|gb|FL202646.1|FL202646
EST:     GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAG                         TTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCAACCCAAGGAGCT
genomic: GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAGgtattgtgaa ... caaattgcagTTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCAACCCAAGGAGCT
EST: gi|211113176|gb|FL202692.1|FL202692
EST:     GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAG                         TTATGTTCCTAATCCAGTCTTGGT
genomic: GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAGgtattgtgaa ... caaattgcagTTATGTTCCTAATCCAGTCTTGGT
EST: gi|31664405|gb|CD573130.1|CD573130
EST:     GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAG                         TTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCAACCCAAGGAGCT
genomic: GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAGgtattgtgaa ... caaattgcagTTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCAACCCAAGGAGCT
EST: gi|148960678|gb|EE011309.2|EE011309
EST:     GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAG                         TTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCAACCCAAGGAGCT
genomic: GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAGgtattgtgaa ... caaattgcagTTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCAACCCAAGGAGCT
EST: gi|149013823|gb|EE043297.2|EE043297
EST:     GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAG                         TTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCAACCCAAGGAGCT
genomic: GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAGgtattgtgaa ... caaattgcagTTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCAACCCAAGGAGCT
EST: gi|78081117|gb|DV509529.1|DV509529
EST:     GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAG                         TTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCAA
genomic: GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAGgtattgtgaa ... caaattgcagTTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCAA
EST: gi|50325946|gb|CO521072.1|CO521072
EST:     GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAG                         TTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCAACCCAAGGAGCT
genomic: GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAGgtattgtgaa ... caaattgcagTTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCAACCCAAGGAGCT
EST: gi|211111338|gb|FL202663.1|FL202663
EST:     GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAG                         TTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCAACCCAAGGAGCT
genomic: GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAGgtattgtgaa ... caaattgcagTTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCAACCCAAGGAGCT
EST: gi|76015327|gb|DT942497.1|DT942497
EST:     GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAG                         TTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCAACCCAAGGAGCT
genomic: GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAGgtattgtgaa ... caaattgcagTTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCAACCCAAGGAGCT
EST: gi|211220204|gb|FL202706.1|FL202706
EST:     GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAG                         TTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCAACCCAAGGAGCT
genomic: GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAGgtattgtgaa ... caaattgcagTTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCAACCCAAGGAGCT
EST: gi|211224334|gb|FL202735.1|FL202735
EST:     GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAG                         TTATGTTCCTAATCCAGTCTTGGT
genomic: GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAGgtattgtgaa ... caaattgcagTTATGTTCCTAATCCAGTCTTGGT
EST: gi|149081616|gb|EE170759.2|EE170759
EST:     GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAG                         TTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCAACCCAAGGAGCT
genomic: GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAGgtattgtgaa ... caaattgcagTTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCAACCCAAGGAGCT
EST: gi|22818902|gb|BU498992.1|BU498992
EST:     GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAG                         TTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCAACCCAAGGAGCT
genomic: GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAGgtattgtgaa ... caaattgcagTTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCAACCCAAGGAGCT
EST: gi|211382590|gb|FK956032.1|FK956032
EST:     AAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAG                         TTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCAACCCAAGGAGCT
genomic: AAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAGgtattgtgaa ... caaattgcagTTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCAACCCAAGGAGCT
EST: gi|101396014|gb|EB819936.1|EB819936
EST:     GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAG                         TTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCAACCCAAGGAGCT
genomic: GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAGgtattgtgaa ... caaattgcagTTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCAACCCAAGGAGCT
EST: gi|211113172|gb|FL202688.1|FL202688
EST:     GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAG                         TTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCAACCCAAGGAGCT
genomic: GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAGgtattgtgaa ... caaattgcagTTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCAACCCAAGGAGCT
EST: gi|211222270|gb|FL202716.1|FL202716
EST:     GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAG                         TTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCAACCCAAGGAGCT
genomic: GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAGgtattgtgaa ... caaattgcagTTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCAACCCAAGGAGCT
EST: gi|44681759|gb|CK786807.1|CK786807
EST:     GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAG                         TTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCAACCCAAGGAGCT
genomic: GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAGgtattgtgaa ... caaattgcagTTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCAACCCAAGGAGCT
EST: gi|91055801|gb|EB166219.1|EB166219
EST:     GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAG                         TTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCAACCCAAGGAGCT
genomic: GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAGgtattgtgaa ... caaattgcagTTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCAACCCAAGGAGCT
EST: gi|211382594|gb|FK956036.1|FK956036
EST:     GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAG                         TTATGTTCCTAATCCAGTCTTGGTGATTATTTATGTCCAACCCAAGGAGCT
genomic: GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAGgtattgtgaa ... caaattgcagTTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCAACCCAAGGAGCT
EST: gi|78081122|gb|DV509534.1|DV509534
EST:     GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAG                         TTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCAACCCAAGGAGCT
genomic: GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAGgtattgtgaa ... caaattgcagTTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCAACCCAAGGAGCT
EST: gi|26456947|gb|CA828530.1|CA828530
EST:     GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAG                         TTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCAACCCAAGGAGCT
genomic: GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAGgtattgtgaa ... caaattgcagTTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCAACCCAAGGAGCT
EST: gi|211112250|gb|FL202671.1|FL202671
EST:     GCC-AASAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAG                         TTATGTTCCTAATCCAGTCTTGG
genomic: GCCCAA-AACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAGgtattgtgaa ... caaattgcagTTATGTTCCTAATCCAGTCTTGG
EST: gi|148943844|gb|EC888923.2|EC888923
EST:     GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAG                         TTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCAACCCAAGGAGCT
genomic: GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAGgtattgtgaa ... caaattgcagTTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCAACCCAAGGAGCT
EST: gi|148935087|gb|EC879128.2|EC879128
EST:     GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAG                         TTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCAACCCAAGGAGCT
genomic: GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAGgtattgtgaa ... caaattgcagTTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCAACCCAAGGAGCT
EST: gi|211220199|gb|FL202701.1|FL202701
EST:     GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAG                         TTATGTTCCTAATC
genomic: GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAGgtattgtgaa ... caaattgcagTTATGTTCCTAATC
EST: gi|148971131|gb|EE021979.2|EE021979
EST:     GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAG                         TTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCAACCCAAGGAGCT
genomic: GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAGgtattgtgaa ... caaattgcagTTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCAACCCAAGGAGCT
EST: gi|211220200|gb|FL202702.1|FL202702
EST:     GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAG                         TTATGTTCCTAATCCAGT
genomic: GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAGgtattgtgaa ... caaattgcagTTATGTTCCTAATCCAGT
EST: gi|211222269|gb|FL202715.1|FL202715
EST:     GGCCCAAAACTAAKGGAGAACGACTTGGATGTCCATGCATTATTCAACAG                         TTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCAACCCAAGGAGCT
genomic: GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAGgtattgtgaa ... caaattgcagTTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCAACCCAAGGAGCT
EST: gi|60350695|gb|DN217668.1|DN217668
EST:     GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAG                         TTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCAACCCAAGGAGCT
genomic: GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAGgtattgtgaa ... caaattgcagTTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCAACCCAAGGAGCT
EST: gi|211111344|gb|FL202669.1|FL202669
EST:     GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAG                         TTATGTTCCTAATCCAGTC
genomic: GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAGgtattgtgaa ... caaattgcagTTATGTTCCTAATCCAGTC
EST: gi|211113173|gb|FL202689.1|FL202689
EST:     GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAG                         TTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCAACCCAAGGAGCT
genomic: GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAGgtattgtgaa ... caaattgcagTTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCAACCCAAGGAGCT
EST: gi|211111343|gb|FL202668.1|FL202668
EST:     GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAG                         TTATGTTCCTAATCCAGTCTTGGTGANTTAT-GATGTCCAACC-AAGGAGC
genomic: GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAGgtattgtgaa ... caaattgcagTTATGTTCCTAATCCAGTCTTGGTGA-TTATTGATGTCCAACCCAAGGAGC
EST: gi|89756277|gb|DY686359.1|DY686359
EST:     GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAG                         TTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCAACCCAAGGAGCT
genomic: GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAGgtattgtgaa ... caaattgcagTTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCAACCCAAGGAGCT
EST: gi|211112256|gb|FL202677.1|FL202677
EST:     GCCCAAAACTAAGGGAGAAACGACT-GGATGTCCATGCATTATTCAACAG                         TTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCCACCCAGGGAGCT
genomic: GCCCAAAACTAAGGGAGAA-CGACTTGGATGTCCATGCATTATTCAACAGgtattgtgaa ... caaattgcagTTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCAACCCAAGGAGCT
EST: gi|62525906|gb|DN828554.1|DN828554
EST:     GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAG                         TTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCAACCCAAGGAGCT
genomic: GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAGgtattgtgaa ... caaattgcagTTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCAACCCAAGGAGCT
EST: gi|211385222|gb|FK956043.1|FK956043
EST:     GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAG                         TTATGTTCCTAATCCAGTCTTGGTGATTATTTATGTCCAACCCAAGGAGCT
genomic: GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAGgtattgtgaa ... caaattgcagTTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCAACCCAAGGAGCT
EST: gi|211112259|gb|FL202680.1|FL202680
EST:     GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAG                         TTATGTTCCTAAT
genomic: GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAGgtattgtgaa ... caaattgcagTTATGTTCCTAAT
EST: gi|149072304|gb|EE160567.2|EE160567
EST:     GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAG                         TTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCAACCCAAGGAGCT
genomic: GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAGgtattgtgaa ... caaattgcagTTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCAACCCAAGGAGCT
EST: gi|149107089|gb|EE188981.2|EE188981
EST:     GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAG                         TTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCAACCCAAGGAGCT
genomic: GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAGgtattgtgaa ... caaattgcagTTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCAACCCAAGGAGCT
EST: gi|211112260|gb|FL202681.1|FL202681
EST:     GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAG                         TTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCAACCCAAGGAGCT
genomic: GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAGgtattgtgaa ... caaattgcagTTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCAACCCAAGGAGCT
EST: gi|211224329|gb|FL202730.1|FL202730
EST:     GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAG                         TTATGTTCCTAATCCAGTCTTDGGTGATTATTGATGTCCAACCCAAGGAGC
genomic: GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAGgtattgtgaa ... caaattgcagTTATGTTCCTAATCCAGTCTT-GGTGATTATTGATGTCCAACCCAAGGAGC
EST: gi|211220198|gb|FL202700.1|FL202700
EST:     GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAG                         TTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCA
genomic: GGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAGgtattgtgaa ... caaattgcagTTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 47 (downstream exon)
Score: 326

CCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAGgtattgtgaa ... caaattgcagTTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCAACCCAAGGAGCTGGGTATACCGACCAAAGCGTACTACGCTGTGGAGGAGGTTAAAGAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 335

CCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAGgtattgtgaa ... caaattgcagTTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCAACCCAAGGAGCTGGGTATACCGACCAAAGCGTACTACGCTGTGGAGGAGGTTAAAGAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 313

CCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAGgtattgtgaa ... caaattgcagTTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCAACCCAAGGAGCTGGGTATACCGACCAAAGCGTACTACGCTGTGGAGGAGGTTAAAGAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 311

CCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAGgtattgtgaa ... caaattgcagTTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCAACCCAAGGAGCTGGGTATACCGACCAAAGCGTACTACGCTGTGGAGGAGGTTAAAGAG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAGgtattgtgaagctatgtcctcttgtgattgttcttttgaactcgtgtgacaattttttaggtactgtcctaagttacgagtgtgtaacttttcagccaac

- - - - - - - - - - - - - - - - - - - - - - - GGAGAA