1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
TGAGCTTGAGCACTCTGTTCAGGAGAATTTACCTAGAGTCTCTGTAGTCATGCCTTTGAAGGGCTTTGGCGAACATAATTTGCAAAATTGGCGAACTCAGgtatgatcaaactgcactatgttataatgattgtagtttatttcttggattgttatgtgcccttataatccgtaaaagtacag
species | Zea mays |
transcript | GRMZM2G061419_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGCCTTTGAAGGGCTTTGGCGAACATAATTTGCAAAATTGGCGAACTCAG ATTACATCACTTTATGGTGGGCCACTGGAATTCTTGTTTATCGTCGAGAGCEST: gi|149075471|gb|EE163995.2|EE163995
genomic: TGCCTTTGAAGGGCTTTGGCGAACATAATTTGCAAAATTGGCGAACTCAGgtatgatcaa ... aaaagtacagATTACATCACTTTATGGTGGGCCACTGGAATTCTTGTTTATCGTCGAGAGC
EST: TGCCTTTGAAGGGCTTTGGCGAACATAATTTGCAAAATTGGCGAACTCAG ATTACATCACTTTATGGTGGGCCACTGGAATTCTTGTTTATCGTCGAGAGCEST: gi|76913089|gb|DV165003.1|DV165003
genomic: TGCCTTTGAAGGGCTTTGGCGAACATAATTTGCAAAATTGGCGAACTCAGgtatgatcaa ... aaaagtacagATTACATCACTTTATGGTGGGCCACTGGAATTCTTGTTTATCGTCGAGAGC
EST: TGCCTTTGAAGGGCTTTGGCGAACATAATTTGCAAAATTGGCGAACTCAG ATTACATCACTTTATGGTGGGCCACTGGAATTCTTGTTTATCGTCGAGAGCEST: gi|74245609|gb|DT653523.1|DT653523
genomic: TGCCTTTGAAGGGCTTTGGCGAACATAATTTGCAAAATTGGCGAACTCAGgtatgatcaa ... aaaagtacagATTACATCACTTTATGGTGGGCCACTGGAATTCTTGTTTATCGTCGAGAGC
EST: TGCCTTTGAAGGGCTTTGGCGAACATAATTTGCAAAATTGGCGAACTCAG ATTACATCACTTTATGGTGGGCCACTGGAATTCTTGTTTATCGTCGAGAGCEST: gi|78090711|gb|DV519085.1|DV519085
genomic: TGCCTTTGAAGGGCTTTGGCGAACATAATTTGCAAAATTGGCGAACTCAGgtatgatcaa ... aaaagtacagATTACATCACTTTATGGTGGGCCACTGGAATTCTTGTTTATCGTCGAGAGC
EST: TGCCTTTGAAGGGCTTTGGCGAACATAATTTGCAAAATTGGCGAACTCAG ATTACATCACTTTATGGTGGGCCACTGGAATTCTTGTTTATCGTCGAGAGCEST: gi|148972415|gb|EE023349.2|EE023349
genomic: TGCCTTTGAAGGGCTTTGGCGAACATAATTTGCAAAATTGGCGAACTCAGgtatgatcaa ... aaaagtacagATTACATCACTTTATGGTGGGCCACTGGAATTCTTGTTTATCGTCGAGAGC
EST: TGCCTTTGAAGGGCTTTGGCGAACATAATTTGCAAAATTGGCGAACTCAG ATTACATCACTTTATGGTGGGCCACTGGAATTCTTGTTTATCGTCGAGAGCEST: gi|89251455|gb|DY623241.1|DY623241
genomic: TGCCTTTGAAGGGCTTTGGCGAACATAATTTGCAAAATTGGCGAACTCAGgtatgatcaa ... aaaagtacagATTACATCACTTTATGGTGGGCCACTGGAATTCTTGTTTATCGTCGAGAGC
EST: TGCCTTTGAAGGGCTTTGGCGAACATAATTTGCAAAATTGGCGAACTCAG ATTACATCACTTTATGGTGGGCCACTGGAATTCTTGTTTATCGTCGAGAGCEST: gi|71304141|gb|DR788190.1|DR788190
genomic: TGCCTTTGAAGGGCTTTGGCGAACATAATTTGCAAAATTGGCGAACTCAGgtatgatcaa ... aaaagtacagATTACATCACTTTATGGTGGGCCACTGGAATTCTTGTTTATCGTCGAGAGC
EST: TGCCTTTGAAGGGCTTTGGCGAACATAATTTGCAAAATTGGCGAACTCAG ATTACATCACTTTATGGTGGGCCACTGGAATTCTTGTTTATCGTCGAGAGCEST: gi|71447226|gb|DR828276.1|DR828276
genomic: TGCCTTTGAAGGGCTTTGGCGAACATAATTTGCAAAATTGGCGAACTCAGgtatgatcaa ... aaaagtacagATTACATCACTTTATGGTGGGCCACTGGAATTCTTGTTTATCGTCGAGAGC
EST: TGCCTTTGAAGGGCTTTGGCGAACATAATTTGCAAAATTGGCGAACTCAG ATTACATCACTTTATGGTGGGCCACTGGAATTCTTGTTTATCGTCGAGAGCEST: gi|71427209|gb|DR808259.1|DR808259
genomic: TGCCTTTGAAGGGCTTTGGCGAACATAATTTGCAAAATTGGCGAACTCAGgtatgatcaa ... aaaagtacagATTACATCACTTTATGGTGGGCCACTGGAATTCTTGTTTATCGTCGAGAGC
EST: TGCCTTTGAAGGGCTTTGGCGAACATAATTTGCAAAATTGGCGAACTCAG ATTACATCACTTTATGGTGGGCCACTGGAATTCTTGTTTATCGTCGAGAGCEST: gi|211431296|gb|FL159140.1|FL159140
genomic: TGCCTTTGAAGGGCTTTGGCGAACATAATTTGCAAAATTGGCGAACTCAGgtatgatcaa ... aaaagtacagATTACATCACTTTATGGTGGGCCACTGGAATTCTTGTTTATCGTCGAGAGC
EST: GCCTTTGAAGGGCTTTGGCGAACATAATTTGCAAAAATGGGCGA-CTCAG ATTACATCACTTTATGGTGGGCCACTGGGAATTCTGGTTTATCGGTCAA-EST: gi|76020824|gb|DT947994.1|DT947994
genomic: GCCTTTGAAGGGCTTTGGCGAACATAATTTGCAAAATTGG-CGAACTCAGgtatgatcaa ... aaaagtacagATTACATCACTTTATGGTGGGCCACTGG-AATTCTTGTTTATCG-TCGAG
EST: TGCCTTTGAAGGGCTTTGGCGAACATAATTTGCAAAATTGGCGAACTCAG ATTACATCACTTTATGGTGGGCCACTGGAATTCTTGTTTATCGTCGAGAGCEST: gi|149076827|gb|EE165480.2|EE165480
genomic: TGCCTTTGAAGGGCTTTGGCGAACATAATTTGCAAAATTGGCGAACTCAGgtatgatcaa ... aaaagtacagATTACATCACTTTATGGTGGGCCACTGGAATTCTTGTTTATCGTCGAGAGC
EST: TGCCTTTGAAGGGCTTTGGCGAACATAATTTGCAAAATTGGCGAACTCAG ATTACATCACTTTATGGTGGGCCACTGGAATTCTTGTTTATCGTCGAGAGCEST: gi|148965663|gb|EE016513.2|EE016513
genomic: TGCCTTTGAAGGGCTTTGGCGAACATAATTTGCAAAATTGGCGAACTCAGgtatgatcaa ... aaaagtacagATTACATCACTTTATGGTGGGCCACTGGAATTCTTGTTTATCGTCGAGAGC
EST: TGCCTTTGAAGGGCTTTGGCGAACATAATTTGCAAAATTGGCGAACTCAG ATTACATCACTTTATGGTGGGCCACTGGAATTCTTGTTTATCGTCGAGAGCEST: gi|148969660|gb|EE020524.2|EE020524
genomic: TGCCTTTGAAGGGCTTTGGCGAACATAATTTGCAAAATTGGCGAACTCAGgtatgatcaa ... aaaagtacagATTACATCACTTTATGGTGGGCCACTGGAATTCTTGTTTATCGTCGAGAGC
EST: TGCCTTTGAAGGGCTTTGGCGAACATAATTTGCAAAATTGGCGAACTCAG ATTACATCACTTTATGGTGGGCCACTGGAATTCTTGTTTATCGTCGAGAGCEST: gi|76293199|gb|DV032767.1|DV032767
genomic: TGCCTTTGAAGGGCTTTGGCGAACATAATTTGCAAAATTGGCGAACTCAGgtatgatcaa ... aaaagtacagATTACATCACTTTATGGTGGGCCACTGGAATTCTTGTTTATCGTCGAGAGC
EST: TGCCTTTGAAGGGCTTTGGCGAACATAATTTGCAAAATTGGCGAACTCAG ATTACATCACTTTATGGTGGGCCACTGGAATTCTTGTTTATCGTCGAGAGC
genomic: TGCCTTTGAAGGGCTTTGGCGAACATAATTTGCAAAATTGGCGAACTCAGgtatgatcaa ... aaaagtacagATTACATCACTTTATGGTGGGCCACTGGAATTCTTGTTTATCGTCGAGAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAGCTTGAGCACTCTGTTCAGGAGAATTTACCTAGAGTCTCTGTAGTCATGCCTTTGAAGGGCTTTGGCGAACATAATTTGCAAAATTGGCGAACTCAGgtatgatcaaactgcactatgttataatgattgtagtttatttcttggattgttatgtgcccttataatccgtaaaagtacag
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