Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTTGCTATGGTTCTGGAAAGACCTGACGCCGTTGCGCAATGGCGCACTTTGATTGGACCAACTGATGCAAAAAAGGCCAAAACCTCTCATCCAAACAGgttaaaaactacatttgttttcctttaacatgttatgtgtttggatacatttttttattgcattactgtattcatttctctttgttttgtggtcgccaacagtactctttgtcatttcag

Basic information

species Zea mays
transcript GRMZM2G060464_T02
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78106343|gb|DV524761.1|DV524761
EST:     TTGATTGGACCAACTGATGCAAAAAAGGCCAAAACCTCTCATCCAAACAG                         CATTAGAGCAATGTGTGGGCTGGACTCTGAGAAAAATTGCGTGCATGGTTC
genomic: TTGATTGGACCAACTGATGCAAAAAAGGCCAAAACCTCTCATCCAAACAGgttaaaaact ... gtcatttcagCATTAGAGCAATGTGTGGGCTGGACTCTGAGAAAAATTGCGTGCATGGTTC
EST: gi|60356826|gb|DN223799.1|DN223799
EST:     TTGATTGGACCAACTGATGCAAAAAAGGCCAAAACCTCTCATCCAAACAG                         CATTAGAGCAATGTGTGGGCTGGACTCTGAGAAAAATTGCGTGCATGGTTC
genomic: TTGATTGGACCAACTGATGCAAAAAAGGCCAAAACCTCTCATCCAAACAGgttaaaaact ... gtcatttcagCATTAGAGCAATGTGTGGGCTGGACTCTGAGAAAAATTGCGTGCATGGTTC
EST: gi|50330122|gb|CO525248.1|CO525248
EST:     TTGATTGGACCAACTGATGCAAAAAAGGCCAAAACCTCTCATCCAAACAG                         CATTAGAGCAATGTGTGGGCTGGACTCTGAGAAAAATTGCGTGCATGGTTC
genomic: TTGATTGGACCAACTGATGCAAAAAAGGCCAAAACCTCTCATCCAAACAGgttaaaaact ... gtcatttcagCATTAGAGCAATGTGTGGGCTGGACTCTGAGAAAAATTGCGTGCATGGTTC
EST: gi|211375638|gb|FL110756.1|FL110756
EST:     TGATTGGACCAACTGATGCAAAAAAGGCCAAAACCTCTCATTCCAA-CAG                         CATTAGAGCAATGTGTGGGCTGGGACTCTGAGAAAAATTGCGTGCAT
genomic: TGATTGGACCAACTGATGCAAAAAAGGCCAAAACCTCTCAT-CCAAACAGgttaaaaact ... gtcatttcagCATTAGAGCAATGTGTGGGCTGG-ACTCTGAGAAAAATTGCGTGCAT
EST: gi|16916528|gb|BM072881.1|BM072881
EST:     TTGATTGGACCAACTGATGCAAAAAAGGCCAAAACCTCTCATCCAAACAG                         CATTAGAGCAATGTGTGGGCTGGACTCTGAGAAAAATTGCGTGCATGGTTC
genomic: TTGATTGGACCAACTGATGCAAAAAAGGCCAAAACCTCTCATCCAAACAGgttaaaaact ... gtcatttcagCATTAGAGCAATGTGTGGGCTGGACTCTGAGAAAAATTGCGTGCATGGTTC
EST: gi|211477830|gb|FL110767.1|FL110767
EST:     TTGATTGGACCAACTGATGCAAAAAAGGCCAAAACCTCTCATCCAAACAG                         CATTAGAGCAATGTGTGGGCTGGACTCTGAGAAAAATTGCGTGCATGGTTC
genomic: TTGATTGGACCAACTGATGCAAAAAAGGCCAAAACCTCTCATCCAAACAGgttaaaaact ... gtcatttcagCATTAGAGCAATGTGTGGGCTGGACTCTGAGAAAAATTGCGTGCATGGTTC
EST: gi|91873960|gb|EB403917.1|EB403917
EST:     TTGATTGGACCAACTGATGCAAAAAAGGCCAAAACCTCTCATCCAAACAG                         CATTAGAGCAATGTGTGGGCTGGACTCTGAGAAAAATTGCGTGCATGGTTC
genomic: TTGATTGGACCAACTGATGCAAAAAAGGCCAAAACCTCTCATCCAAACAGgttaaaaact ... gtcatttcagCATTAGAGCAATGTGTGGGCTGGACTCTGAGAAAAATTGCGTGCATGGTTC
EST: gi|60358496|gb|DN225469.1|DN225469
EST:     TTGATTGGACCAACTGATGCAAAAAAGGCCAAAACCTCTCATCCAAACAG                         CATTAGAGCAATGTGTGGGCTGGACTCTGAGAAAAATTGCGTGCATGGTTC
genomic: TTGATTGGACCAACTGATGCAAAAAAGGCCAAAACCTCTCATCCAAACAGgttaaaaact ... gtcatttcagCATTAGAGCAATGTGTGGGCTGGACTCTGAGAAAAATTGCGTGCATGGTTC
EST: gi|211375642|gb|FL110760.1|FL110760
EST:     TTGATTGGACCAACTGATGCAAAAAAGGCCAAAACCTCTCATCCAAACAG                         CATTAGAGCAATGTGTGGGCTGGACTCTGAGAAAAATTGCGTGCATGGTTC
genomic: TTGATTGGACCAACTGATGCAAAAAAGGCCAAAACCTCTCATCCAAACAGgttaaaaact ... gtcatttcagCATTAGAGCAATGTGTGGGCTGGACTCTGAGAAAAATTGCGTGCATGGTTC
EST: gi|78090669|gb|DV519043.1|DV519043
EST:     TTGATTGGACCAACTGATGCAAAAAAGGCCAAAACCTCTCATCCAAACAG                         CATTAGAGCAATGTGTGGGCTGGACTCTGAGAAAAATTGCGTGCATGGTTC
genomic: TTGATTGGACCAACTGATGCAAAAAAGGCCAAAACCTCTCATCCAAACAGgttaaaaact ... gtcatttcagCATTAGAGCAATGTGTGGGCTGGACTCTGAGAAAAATTGCGTGCATGGTTC
EST: gi|78106342|gb|DV524760.1|DV524760
EST:     TTGATTGGACCAACTGATGCAAAAAAGGCCAAAACCTCTCATCCAAACAG                         CATTAGAGCAATGTGTGGGCTGGACTTTGAGAAAAATTGCGTGCATGGTTC
genomic: TTGATTGGACCAACTGATGCAAAAAAGGCCAAAACCTCTCATCCAAACAGgttaaaaact ... gtcatttcagCATTAGAGCAATGTGTGGGCTGGACTCTGAGAAAAATTGCGTGCATGGTTC
EST: gi|26457519|gb|CA829102.1|CA829102
EST:     TTGATTGGACCAACTGATGCAAAAAAGGCCAAAACCTCTCATCCAAACAG                         CATTAGAGCAATGTGTGGGCTGGACTCTGAGAAAAATTGCGTGCATGGTTC
genomic: TTGATTGGACCAACTGATGCAAAAAAGGCCAAAACCTCTCATCCAAACAGgttaaaaact ... gtcatttcagCATTAGAGCAATGTGTGGGCTGGACTCTGAGAAAAATTGCGTGCATGGTTC
EST: gi|78090668|gb|DV519042.1|DV519042
EST:     TTGATTGGACCAACTGATGCAAAAAAGGCCAAAACCTCTCATCCAAACAG                         CATTAGAGCAATGTGTGGGCTGGACTTTGAGAAAAATTGCGTGCATGGTTC
genomic: TTGATTGGACCAACTGATGCAAAAAAGGCCAAAACCTCTCATCCAAACAGgttaaaaact ... gtcatttcagCATTAGAGCAATGTGTGGGCTGGACTCTGAGAAAAATTGCGTGCATGGTTC
EST: gi|60351869|gb|DN218842.1|DN218842
EST:     TTGATTGGACCAACTGATGCAAAAAAGGCCAAAACCTCTCATCCAAACAG                         CATTAGAGCAATGTGTGGGCTGGACTCTGAGAAAAATTGCGTGCATGGTTC
genomic: TTGATTGGACCAACTGATGCAAAAAAGGCCAAAACCTCTCATCCAAACAGgttaaaaact ... gtcatttcagCATTAGAGCAATGTGTGGGCTGGACTCTGAGAAAAATTGCGTGCATGGTTC
EST: gi|211375643|gb|FL110761.1|FL110761
EST:     TTGATTGGACCAACTGATGCAAAAAAGGCCAAAACCTCTCATCCAAACAG                         CATTAGAGCAATGTGTGGGCTGGACTCTGAGAAAAATTGCGTGCATGGTTC
genomic: TTGATTGGACCAACTGATGCAAAAAAGGCCAAAACCTCTCATCCAAACAGgttaaaaact ... gtcatttcagCATTAGAGCAATGTGTGGGCTGGACTCTGAGAAAAATTGCGTGCATGGTTC
EST: gi|60339376|gb|DN206349.1|DN206349
EST:     TTGATTGGACCAACTGATGCAAAAAAGGCCAAAACCTCTCATCCAAACAG                         CATTAGAGCAATGTGTGGGCTGGACTCTGAGAAAAATTGCGTGCATGGTTC
genomic: TTGATTGGACCAACTGATGCAAAAAAGGCCAAAACCTCTCATCCAAACAGgttaaaaact ... gtcatttcagCATTAGAGCAATGTGTGGGCTGGACTCTGAGAAAAATTGCGTGCATGGTTC