Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAACTTGGCTGGGCCATCGATGAGGATTTTGGTTCGTTTGAGGCACTTGTAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTGgtatgtatattactatattatgctttgtttatgtttattgagaatagttgaaggtgtgttctgttgaccattaacctcatgcttctctgcag

Basic information

species Zea mays
transcript GRMZM2G059991_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G059991_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os05g25850.2 (Oryza sativa), 5'ss of exon 3
GAAACTTGGCTGGGCCATCGATGAGGATTTTGGTTCGTTTGAGGCACTTGTAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTGgtatgtatattac-tatattatgctttgtttatgt-ttattgagaatagt-tgaaggtgtgttctgttgacc-attaacctcatgcttctctgcag
 ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||| |  |   ||    |  |   || |||| | ||   |   ||| |||||   |||  |||| |   ||||   | ||  |    | |||
AAAACTTGGCTGGGCCATTGATGAGGATTTTGGTTCATTTGAGGCACTTGTAAAGAAGATGAGTGCAGAAGGTGCTGCTTTACAAGGATCTGGATGGGTGgtatgtacaccatgcattgctttatccattgatgtgtcatcctgttcagtctgaagaaatgtattgttcatttattatatttattttctcgtacag

upper sequence: GRMZM2G059991_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA04G39930.1 (Glycine max), 5'ss of exon 3
GAAACTTGGCTGGGCCATCGATGAGGATTTTGGTTCGTTTGAGGCACTTGTAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTGgta-----tgtatattactatattat-gctttgtttatgtttattgagaatagttgaaggt--gtgttctgttgaccatt---aacctcatgcttctctgcag----------------------
   ||| || |||||||| ||     ||||||| || ||||| ||| | ||| | ||  | ||||||||||| |||||  |||| |||||||||||||||||      || | |||   | |||       | | |    |  ||    ||  ||  || |   |||   | | |  |||   ||     || |||  |  |                       
TTCACTGGGATGGGCCATTGACACACATTTTGGCTCTTTTGAAGCATTAGTACAAAAAGTTAATGCAGAAGGTGCTGCACTACAGGGGTCTGGATGGGTGgtgagttgtgcagattctgagattcccagcatatcttctatccttacatatccttagagcttaatgtctcggtcattatttgaaatgcactgtttccttttacttcatttgtactgcttgcccag

upper sequence: GRMZM2G059991_T01 (Zea mays), 5'ss of exon 3
lower sequence: AT3G56350.1 (Arabidopsis thaliana), 5'ss of exon 3
GAAACTTGGCTG-GGCCATCGATGAGGATTTTGGTTCGTTTGAGGCACTTGTAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTGgtatgtatattactatattatgctttgtttatgtttattgagaatagttgaaggtgtgttctgttgaccattaacctcatgcttctctgcag---------------
     ||||||  ||| |||||||   |||| || ||  | || | | |  |  | || ||||| || |||||||||||| |||| || ||||||||||||||| || | ||   | | | | | ||    |||||    ||  | | ||   ||| |  || | |||   || |  | |   ||     |||               
-TCCTTTGGCTTCGGCGATCGATGCTCATTTCGGATCACTAGAAGGATTGATCCAAAAAATGAACGCGGAAGGCGCTGCTGTACAGGGATCTGGATGGGTGgtaagttttttttcagaatct-cattaacaatgttgg--gaacacaattattggttt--tcagatgaaagttta--taaaaatttctgacagaatatcaaaattcat

upper sequence: GRMZM2G059991_T01 (Zea mays), 5'ss of exon 3
lower sequence: EFJ28961 (Selaginella moellendorffii), 5'ss of exon 3
GAAACTTGGCTGGGCCATCGATGAGGATTTTGGTTCGTTTGAGGCACTTGTAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTGgtatgtatattactatattatgctttgtttatgtttattgagaatagttgaaggtgtgttctgttgaccattaacctcatgcttctctgcag
 || ||||  | ||| ||| | || || ||||| ||| | |||  |||| |    ||||||||||| || || |||||| | ||||| |||||||||||||||||| | || || | || |      ||||| |||  |||    | |  | ||  || || |                             
AAAGCTTGCTTCGGCGATCAAGGACGAGTTTGGATCGCTGGAGAAACTTATCGCTAAGATGAATGCGGATGGAGCTGCTCTTCAAGGCTCTGGATGGGTGgtatgtgtctttcttttttct------tttatctttcatga----actctatggcttgatcag-----------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148960461|gb|EE011056.2|EE011056
EST:     TAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTG                         TGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACAACAGCT
genomic: TAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTGgtatgtatat ... ttctctgcagTGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACAACAGCT
EST: gi|60342800|gb|DN209773.1|DN209773
EST:     TAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTG                         TGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACAACAGCT
genomic: TAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTGgtatgtatat ... ttctctgcagTGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACAACAGCT
EST: gi|4835039|gb|AI670265.1|AI670265
EST:     TAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTG                         TGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCGGTTGAAACAACAGCT
genomic: TAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTGgtatgtatat ... ttctctgcagTGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACAACAGCT
EST: gi|24765654|gb|CA400813.1|CA400813
EST:     TAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTG                         TGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCGGTTGAAACAACAGCT
genomic: TAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTGgtatgtatat ... ttctctgcagTGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACAACAGCT
EST: gi|149058839|gb|EE156860.2|EE156860
EST:     TAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTG                         TGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACAACAGCT
genomic: TAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTGgtatgtatat ... ttctctgcagTGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACAACAGCT
EST: gi|60395736|gb|DN228606.1|DN228606
EST:     TAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTG                         TGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACAACAGCT
genomic: TAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTGgtatgtatat ... ttctctgcagTGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACAACAGCT
EST: gi|71429171|gb|DR810221.1|DR810221
EST:     TAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTG                         TGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACAACAGCT
genomic: TAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTGgtatgtatat ... ttctctgcagTGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACAACAGCT
EST: gi|21389905|gb|BQ527954.1|BQ527954
EST:     TAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTG                         TGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCGGTTGAAACAACAGCT
genomic: TAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTGgtatgtatat ... ttctctgcagTGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACAACAGCT
EST: gi|211507633|gb|FL212146.1|FL212146
EST:     TAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTG                         TGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACAACAGCT
genomic: TAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTGgtatgtatat ... ttctctgcagTGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACAACAGCT
EST: gi|5686828|gb|AI939742.1|AI939742
EST:     GATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTG                         TGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCGGTTGAAACAACAGCT
genomic: GATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTGgtatgtatat ... ttctctgcagTGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACAACAGCT
EST: gi|50337946|gb|CO533072.1|CO533072
EST:     TAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTG                         TGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACAACAGCT
genomic: TAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTGgtatgtatat ... ttctctgcagTGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACAACAGCT
EST: gi|22935765|gb|BU572040.1|BU572040
EST:     TAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTG                         TGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCGGTTGAAACAACAGCT
genomic: TAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTGgtatgtatat ... ttctctgcagTGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACAACAGCT
EST: gi|24764063|gb|CA399232.1|CA399232
EST:     AAGGGTCTGGATGGGTG                         TGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCGGTTGAAACAACAGCT
genomic: AAGGGTCTGGATGGGTGgtatgtatat ... ttctctgcagTGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACAACAGCT
EST: gi|76933824|gb|DV173600.1|DV173600
EST:     TAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTG                         TGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACAACAGCT
genomic: TAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTGgtatgtatat ... ttctctgcagTGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACAACAGCT
EST: gi|60400370|gb|DN233177.1|DN233177
EST:     TAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTG                         TGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACAACAGCT
genomic: TAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTGgtatgtatat ... ttctctgcagTGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACAACAGCT
EST: gi|149085021|gb|EE174530.2|EE174530
EST:     TAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTG                         TGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACAACAGCT
genomic: TAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTGgtatgtatat ... ttctctgcagTGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACAACAGCT
EST: gi|24767245|gb|CA402389.1|CA402389
EST:     TAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTG                         TGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCGGTTGAAACAACAGCT
genomic: TAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTGgtatgtatat ... ttctctgcagTGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACAACAGCT
EST: gi|18660326|gb|BM500804.1|BM500804
EST:     AGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTG                         TGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCGGTTGAAACAACAGCT
genomic: AGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTGgtatgtatat ... ttctctgcagTGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACAACAGCT
EST: gi|29576842|gb|CB616954.1|CB616954
EST:     TAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTG                         TGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACAACAGCT
genomic: TAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTGgtatgtatat ... ttctctgcagTGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACAACAGCT
EST: gi|60394126|gb|DN226996.1|DN226996
EST:     TAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTG                         TGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACAACAGCT
genomic: TAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTGgtatgtatat ... ttctctgcagTGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACAACAGCT
EST: gi|31358052|gb|CD442409.1|CD442409
EST:     TAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTG                         TGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCGGTTGAAACAACAGCT
genomic: TAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTGgtatgtatat ... ttctctgcagTGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACAACAGCT
EST: gi|60346223|gb|DN213196.1|DN213196
EST:     TAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTG                         TGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACAACAGCT
genomic: TAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTGgtatgtatat ... ttctctgcagTGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACAACAGCT
EST: gi|16919543|gb|BM074241.1|BM074241
EST:     TAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTG                         TGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACAACAGCT
genomic: TAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTGgtatgtatat ... ttctctgcagTGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACAACAGCT
EST: gi|60399935|gb|DN232742.1|DN232742
EST:     TAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTG                         TGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACAACAGCT
genomic: TAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTGgtatgtatat ... ttctctgcagTGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACAACAGCT
EST: gi|76013538|gb|DT940708.1|DT940708
EST:     TAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTG                         TGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACAACAGCT
genomic: TAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTGgtatgtatat ... ttctctgcagTGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACAACAGCT
EST: gi|78076311|gb|DV504745.1|DV504745
EST:     TAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTG                         TGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACAACAGCT
genomic: TAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTGgtatgtatat ... ttctctgcagTGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACAACAGCT
EST: gi|5058804|gb|AI737280.1|AI737280
EST:     TAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTG                         TGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCGGTTGAAACAACAGCT
genomic: TAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTGgtatgtatat ... ttctctgcagTGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACAACAGCT
EST: gi|211509987|gb|FL212152.1|FL212152
EST:     TAAAGAGGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTG                         TGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACAAAAGCT
genomic: TAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTGgtatgtatat ... ttctctgcagTGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACAACAGCT
EST: gi|5124097|gb|AI745938.1|AI745938
EST:     TAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTG                         TGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCGGTTGAAACAACAGCT
genomic: TAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTGgtatgtatat ... ttctctgcagTGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACAACAGCT
EST: gi|76281803|gb|DV021371.1|DV021371
EST:     TAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTG                         TGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACAACAGCT
genomic: TAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTGgtatgtatat ... ttctctgcagTGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACAACAGCT
EST: gi|16925475|gb|BM078543.1|BM078543
EST:     TAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTG                         TGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACAACAGCT
genomic: TAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTGgtatgtatat ... ttctctgcagTGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACAACAGCT
EST: gi|60401116|gb|DN233923.1|DN233923
EST:     TAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTG                         TGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACAACAGCT
genomic: TAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTGgtatgtatat ... ttctctgcagTGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACAACAGCT
EST: gi|76933825|gb|DV173601.1|DV173601
EST:     TAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTG                         TGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACAACAGCT
genomic: TAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTGgtatgtatat ... ttctctgcagTGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACAACAGCT
EST: gi|22542675|gb|BU093113.1|BU093113
EST:     TAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTG                         TGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCGGTTGAAACAACAGCT
genomic: TAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTGgtatgtatat ... ttctctgcagTGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACAACAGCT
EST: gi|4967171|gb|AI692081.1|AI692081
EST:     TAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTG                         TGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCGGTTGAAACAACAGCT
genomic: TAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTGgtatgtatat ... ttctctgcagTGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACAACAGCT
EST: gi|31361853|gb|CD446210.1|CD446210
EST:     GGGTCTGGATGGGTG                         TGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCGGTTGAAACAACAGCT
genomic: GGGTCTGGATGGGTGgtatgtatat ... ttctctgcagTGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACAACAGCT
EST: gi|60400384|gb|DN233191.1|DN233191
EST:     TAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTG                         TGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACAACAGCT
genomic: TAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTGgtatgtatat ... ttctctgcagTGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACAACAGCT
EST: gi|22818940|gb|BU499030.1|BU499030
EST:     TAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTG                         TGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCGGTTGAAACAACAGCT
genomic: TAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTGgtatgtatat ... ttctctgcagTGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACAACAGCT
EST: gi|149085100|gb|EE174607.2|EE174607
EST:     TAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTG                         TGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACAACAGCT
genomic: TAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTGgtatgtatat ... ttctctgcagTGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACAACAGCT
EST: gi|91871701|gb|EB401658.1|EB401658
EST:     TAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTG                         TGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACAACAGCT
genomic: TAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTGgtatgtatat ... ttctctgcagTGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACAACAGCT
EST: gi|78087633|gb|DV516026.1|DV516026
EST:     TAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTG                         TGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACAACAGCT
genomic: TAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTGgtatgtatat ... ttctctgcagTGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACAACAGCT
EST: gi|4966517|gb|AI691373.1|AI691373
EST:     AAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTG                         TGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCGGTTGAAACAACAGCT
genomic: AAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTGgtatgtatat ... ttctctgcagTGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACAACAGCT
EST: gi|60399390|gb|DN232204.1|DN232204
EST:     TAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTG                         TGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACAACAGCT
genomic: TAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTGgtatgtatat ... ttctctgcagTGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACAACAGCT
EST: gi|31357365|gb|CD441722.1|CD441722
EST:     TAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTG                         TGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCGGTTGAAACAACAGCT
genomic: TAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTGgtatgtatat ... ttctctgcagTGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACAACAGCT
EST: gi|4837565|gb|AI670655.1|AI670655
EST:     TAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTG                         TGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCGGTTGAAACAACAGCT
genomic: TAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTGgtatgtatat ... ttctctgcagTGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACAACAGCT
EST: gi|4887485|gb|AI677584.1|AI677584
EST:     TAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTG                         TGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCGGTTGAAACAACAGCT
genomic: TAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTGgtatgtatat ... ttctctgcagTGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACAACAGCT
EST: gi|8665682|gb|BE186498.1|BE186498
EST:     TAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTG                         TGGTTAGCTTTGGATAAAGAGGCAAAAAAGCCTTCGGTTGAAACAACAGCT
genomic: TAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTGgtatgtatat ... ttctctgcagTGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACAACAGCT
EST: gi|60357925|gb|DN224898.1|DN224898
EST:     TAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTG                         TGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACAACAGCT
genomic: TAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTGgtatgtatat ... ttctctgcagTGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACAACAGCT
EST: gi|78026618|gb|DV495005.1|DV495005
EST:     TAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTG                         TGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCGGTTGAAACAACAGCT
genomic: TAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTGgtatgtatat ... ttctctgcagTGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACAACAGCT
EST: gi|67020859|gb|CO449608.1|CO449608
EST:     TAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTG                         TGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACAACAGCT
genomic: TAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTGgtatgtatat ... ttctctgcagTGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACAACAGCT
EST: gi|76013539|gb|DT940709.1|DT940709
EST:     TAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTG                         TGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACAACAGCT
genomic: TAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTGgtatgtatat ... ttctctgcagTGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACAACAGCT
EST: gi|60343978|gb|DN210951.1|DN210951
EST:     TAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTG                         TGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACAACAGCT
genomic: TAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTGgtatgtatat ... ttctctgcagTGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACAACAGCT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 48 (downstream exon)
Score: 271

GAAACTTGGCTGGGCCATCGATGAGGATTTTGGTTCGTTTGAGGCACTTGTAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTGgtatgtatat ... ttctctgcagTGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACAACAGCTAATCAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 292

GAAACTTGGCTGGGCCATCGATGAGGATTTTGGTTCGTTTGAGGCACTTGTAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTGgtatgtatat ... ttctctgcagTGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACAACAGCTAATCAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 320

GAAACTTGGCTGGGCCATCGATGAGGATTTTGGTTCGTTTGAGGCACTTGTAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTGgtatgtatat ... ttctctgcagTGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACAACAGCTAATCAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 316

GAAACTTGGCTGGGCCATCGATGAGGATTTTGGTTCGTTTGAGGCACTTGTAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTGgtatgtatat ... ttctctgcagTGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACAACAGCTAATCAG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAAACTTGGCTGGGCCATCGATGAGGATTTTGGTTCGTTTGAGGCACTTGTAAAGAAGATGAATGCAGAAGGCGCTGCTTTACAAGGGTCTGGATGGGTGgtatgtatattactatattatgctttgtttatgtttattgagaatagttgaaggtgtgttctgttgaccattaacctcatgcttctctgcag

- - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT