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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGACTCTGTTGGGTTCCTGAAGATTAGCTCAGGGTCTGTTGTACTTCCCATCGGAAAGTTATCAGTTGGCTTTTGTTGCCACCGAGCATTACTGTTCAAGgtgatcttgcttcttgatcgtacattgtgtactgagcagatactgacatgtcactccagcacaatattttatggcacaatattacttgtcttcctttcta...

Basic information

species Zea mays
transcript GRMZM2G059671_T05
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G059671_T04 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os02g32610.3 (Oryza sativa), 5'ss of exon 3
AGACTCTGTTGGGTTCCTGAAGATTAGCTCAGGGTCTGTTGTACTTCCCATCGGAAAGTTATCAGTTGGCTTTTGTTGCCACCGAGCATTACTGTTCAAGgtgatcttgcttcttgatcg-tacattgtgta-ctgagcagatactgacatgtcactccagcacaatattttatggcac---aatattacttgtcttcctttcta
||||||||  ||||||||||||||||| ||||| |||||||| ||||| || || ||||||||| | ||  ||||  | |||||| | || ||||| ||||| | |||||||||  |||| ||  || |  |    |  | ||  |   || |     ||  |   |   |  | || |   ||  ||  || | |   |||   
AGACTCTGCCGGGTTCCTGAAGATTAGTTCAGGTTCTGTTGTGCTTCCAATTGGGAAGTTATCAATCGGTCTTTGCCGGCACCGATCGTTGCTGTTTAAGgtcaccttgcttct--atcgctatgttctaaaatctattaaatcttcgtatttagtggcaatattttccatgttagcgctggaactttgtttttatgatttt---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76284241|gb|DV023809.1|DV023809
EST:     TCGGAAAGTTATCAGTTGGCTTTTGTTGCCACCGAGCATTACTGTTCAAG                         ACCCTGGCGGATTCCATCAATCTGCCCTGTCGCATTGTGAAGGGATGCAAG
genomic: TCGGAAAGTTATCAGTTGGCTTTTGTTGCCACCGAGCATTACTGTTCAAGgtgatcttgc ... aaacaaaaagACCCTGGCGGATTCCATCAATCTGCCCTGTCGCATTGTGAAGGGATGCAAG