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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGAAGGGTATGGAATGACAGAGACATCTTGTGTCATCAGTACAATGAATATTGGTGACAGATCAATTGGACATGTTGGATCTCCAAATCCTTCTTGTGgtaagctctgcatttgttttttaagataaaattaatccatcttcaaataatgctgtgtttatgctattaattccttttgattttacatttatgttactcg...

Basic information

species Zea mays
transcript GRMZM2G059381_T03
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213179260|gb|FM184509.1|FM184509
EST:     TATTGGTGACAGATCAATTGGACATGTTGGATCTCCAAATCCTTCTTGTG                         AGGTTAAACTTGTGGACGTCCCAGAAATGAATTATACTTCGGAGGATCAAC
genomic: TATTGGTGACAGATCAATTGGACATGTTGGATCTCCAAATCCTTCTTGTGgtaagctctg ... tcttcttcagAGGTTAAACTTGTGGACGTCCCAGAAATGAATTATACTTCGGAGGATCAAC
EST: gi|33090935|gb|CF050929.1|CF050929
EST:     TATTGGTGACAGATCAATTGGACATGTTGGATCTCCAAATCCTTCTTGTG                         AGGTTAAACTTGTGGACGTCCCAGAAATGAATTATACTTCGGAGGATCAAC
genomic: TATTGGTGACAGATCAATTGGACATGTTGGATCTCCAAATCCTTCTTGTGgtaagctctg ... tcttcttcagAGGTTAAACTTGTGGACGTCCCAGAAATGAATTATACTTCGGAGGATCAAC
EST: gi|87153602|gb|DY398391.1|DY398391
EST:     GATCAATTGGACATGTTGGATCTCCAAATCCTTCTTGTG                         AGGTTAAACTTGTGGACGTCCCAGAAATGAATTATACTTCGGAGGATCAAC
genomic: GATCAATTGGACATGTTGGATCTCCAAATCCTTCTTGTGgtaagctctg ... tcttcttcagAGGTTAAACTTGTGGACGTCCCAGAAATGAATTATACTTCGGAGGATCAAC
EST: gi|19350747|gb|BM895279.1|BM895279
EST:     AATCCTTCTTGTG                         AGGTTAAACTTGTGGACGTCCCAGAAATGAATTATACTTCGGAGGATCAAC
genomic: AATCCTTCTTGTGgtaagctctg ... tcttcttcagAGGTTAAACTTGTGGACGTCCCAGAAATGAATTATACTTCGGAGGATCAAC
EST: gi|58030032|gb|CX725459.1|CX725459
EST:     TATTGGCGACAGATCAATTGGACATGTTGGATCTCCAAATCCTTCTTGTG                         AGGTTAAACTTGTGGACGTCCCAGAAATGAATTATACTTCGGAGGATCAAC
genomic: TATTGGTGACAGATCAATTGGACATGTTGGATCTCCAAATCCTTCTTGTGgtaagctctg ... tcttcttcagAGGTTAAACTTGTGGACGTCCCAGAAATGAATTATACTTCGGAGGATCAAC
EST: gi|32847207|gb|CD986888.1|CD986888
EST:     ATCTCTAAATCCTTCTTGTG                         AGGTTAAACTTGTGGACGTCCCAGAAATGAATTATACTTCGGAGGATCAGC
genomic: ATCTCCAAATCCTTCTTGTGgtaagctctg ... tcttcttcagAGGTTAAACTTGTGGACGTCCCAGAAATGAATTATACTTCGGAGGATCAAC
EST: gi|211308069|gb|FL216534.1|FL216534
EST:     TATTGGTGACAGATCAATTGGACATGTTGGATCTCCAAATCCTTCTTGTG                         AGGTTAAACTTGTGGACGTCCCAGAAATGAATTATACTTCGGAGGATCAAC
genomic: TATTGGTGACAGATCAATTGGACATGTTGGATCTCCAAATCCTTCTTGTGgtaagctctg ... tcttcttcagAGGTTAAACTTGTGGACGTCCCAGAAATGAATTATACTTCGGAGGATCAAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTTGAAGGGTATGGAATGACAGAGACATCTTGTGTCATCAGTACAATGAATATTGGTGACAGATCAATTGGACATGTTGGATCTCCAAATCCTTCTTGTGgtaagctctgcatttgttttttaagataaaattaatccatcttcaaataatgctgtgtttatgctattaattccttttgattttacatttatgttactcg

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