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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGCGCGATGAAGTCGTATAGGCTATCGGAGCTCAGCGACACCGAAGTTAGCGGCCTCAAAGCTCGTCCCCGCATCGATTTCTCATCTATTTTTGGCACGgtgagatgacactgagattacccatggtgttgaagtccagtattgtttcatttcatagcctgataaccatgggattctgtcctgtgcaattag

Basic information

species Zea mays
transcript GRMZM2G058584_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G058584_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g13190.1 (Oryza sativa), 5'ss of exon 1
TGGCGCGATGAAGTCGTATAGGCTATCGGAGCTCAGCGACACCGAAGTTAGCGGCCTCAAAGCTCGTCCCCGCATCGATTTCTCATCTATTTTTGGCACGgtgagatgacactgagattacccatggtgttgaagtccagtattgtttcatttca-tagcc-tgataaccatgggattctgtcctgtgcaattag------------------------------------------------
 | ||| ||||||||||| ||||| ||||||||||||||| |||| ||  |||||||||| || || ||||||||||| ||||| || ||||| |||||||||||||      |||||       |     ||     ||           | || ||||| || | ||   | || | |||  |      |                                                   
CGCCGCCATGAAGTCGTACAGGCTGTCGGAGCTCAGCGACGCCGAGGTCGGCGGCCTCAAGGCGCGCCCCCGCATCGACTTCTCCTCCATTTTCGGCACGgtgagatagagacgagatggagagagagagagagagagagagagagcgagctacactagccgtggtcactgcgtgaatttgtgattgattgtctctcaaccattgggcttagtcttttttttcttttttttgggtgcgagtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71774596|gb|DR972474.1|DR972474
EST:     GCGGCCTCAAAGCTCGTCCCCGCATCGATTTCTCATCTATTTTTGGCACG                         GTGAATCCAATCGTTGAAGATGTCCGTGTGAGAGGTGATGCAGCAGTTAAG
genomic: GCGGCCTCAAAGCTCGTCCCCGCATCGATTTCTCATCTATTTTTGGCACGgtgagatgac ... gtgcaattagGTGAATCCAATCGTTGAAGATGTCCGTGTGAGAGGTGATGCAGCAGTTAAG
EST: gi|76012899|gb|DT940069.1|DT940069
EST:     CTATTTTNTGGCACG                         GTGAATCCAATCGTTGAAGATGTCCGTGTGAGAGGTGATGCAGCAGTTAA
genomic: CTATTTT-TGGCACGgtgagatgac ... gtgcaattagGTGAATCCAATCGTTGAAGATGTCCGTGTGAGAGGTGATGCAGCAGTTAA
EST: gi|37422448|gb|CF648934.1|CF648934
EST:     GCGGCCTCAAAGCTCGTCCCCGCATCGATTTCTCATCTATTTTTGGCACG                         GTGAATCCAATCGTTGAAGATGTCCGTGTGAGAGGTGATGCAGCAGTTAAG
genomic: GCGGCCTCAAAGCTCGTCCCCGCATCGATTTCTCATCTATTTTTGGCACGgtgagatgac ... gtgcaattagGTGAATCCAATCGTTGAAGATGTCCGTGTGAGAGGTGATGCAGCAGTTAAG
EST: gi|71428630|gb|DR809680.1|DR809680
EST:     GCGGCCTCAAAGCTCGTCCCCGCATCGATTTCTCATCTATTTTTGGCACG                         GTGAATCCAATCGTTGAAGATGTCCGTGTGAGAGGTGATGCAGCAGTTAAG
genomic: GCGGCCTCAAAGCTCGTCCCCGCATCGATTTCTCATCTATTTTTGGCACGgtgagatgac ... gtgcaattagGTGAATCCAATCGTTGAAGATGTCCGTGTGAGAGGTGATGCAGCAGTTAAG