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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTATGTCGATGAAGATGCCTCCATATCCACCATAGAAAGGAGGGCGAGCCTGAAGGAATTCTACAgtatgcttactatccaccatagaaactagtgattaagaagctttttttttctgttcaagatttttttttgttgatgctgctgctgctgctgcagcagtggtttaatatagttttgggaccccatggaatgcag

Basic information

species Zea mays
transcript GRMZM2G058450_T01
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211287515|gb|FL360425.1|FL360425
EST:     TGCCTCCATATCCACCATAGAAAGGAGTGCGAGCCTGAAGGAATTCTACA                         CTATCATATACCCTTTCTTGCAACAACTGGAGGACAACTTGATGGACAAGG
genomic: TGCCTCCATATCCACCATAGAAAGGAGGGCGAGCCTGAAGGAATTCTACAgtatgcttac ... tggaatgcagCTATCATATACCCTTTCTTGCAACAACTGGAGGACAACTTGATGGACAAGG
EST: gi|211372879|gb|FL335377.1|FL335377
EST:     TGCCTCCATATCCACCATAGAAAGGAGGGCGAGCCTGAAGGAATTCTACA                         CTATCATATACCCTTTCTTGCAACAACTGGAGGACAACTTGATGGACAAGG
genomic: TGCCTCCATATCCACCATAGAAAGGAGGGCGAGCCTGAAGGAATTCTACAgtatgcttac ... tggaatgcagCTATCATATACCCTTTCTTGCAACAACTGGAGGACAACTTGATGGACAAGG
EST: gi|101401307|gb|EB822331.1|EB822331
EST:     TGCCTCCATATCCACCATAGAAGGGAGGGCGAGCCTGAAGGAATTCTACA                         CTATCATATACCCTTTCTTGCA
genomic: TGCCTCCATATCCACCATAGAAAGGAGGGCGAGCCTGAAGGAATTCTACAgtatgcttac ... tggaatgcagCTATCATATACCCTTTCTTGCA
EST: gi|211535303|gb|FL356758.1|FL356758
EST:     TGCCTCCATATCCACCATAGAAAGGAGGGCGAGCCTGAAGGAATTCTACA                         CTATCATATACCCTTTCTTGCAACAACTGGAGGACAACTTGATGGACAAGG
genomic: TGCCTCCATATCCACCATAGAAAGGAGGGCGAGCCTGAAGGAATTCTACAgtatgcttac ... tggaatgcagCTATCATATACCCTTTCTTGCAACAACTGGAGGACAACTTGATGGACAAGG
EST: gi|211049886|gb|FL343175.1|FL343175
EST:     TGCCTCCATATCCACCATAGAAAGGAGGGCGAGCCTGAAGGAATTCTACA                         CTATCATATACCCTTTCTTGCAACAACTGGAGGACAACTTGATGGACAAGG
genomic: TGCCTCCATATCCACCATAGAAAGGAGGGCGAGCCTGAAGGAATTCTACAgtatgcttac ... tggaatgcagCTATCATATACCCTTTCTTGCAACAACTGGAGGACAACTTGATGGACAAGG
EST: gi|211165711|gb|FL359023.1|FL359023
EST:     TGCCTCCATATCCACCATAGAAAGGAGGGCGAGCCTGAAGGAATTCTACA                         CTATCATATACCCTTTCTTGCAACAACTGG
genomic: TGCCTCCATATCCACCATAGAAAGGAGGGCGAGCCTGAAGGAATTCTACAgtatgcttac ... tggaatgcagCTATCATATACCCTTTCTTGCAACAACTGG
EST: gi|211010674|gb|FL358964.1|FL358964
EST:     TGCCTCCATATCCACCATAGAAAGGAGGGCGAGCCTGAAGGAATTCTACA                         CTATCATATACCCTTTCTTGCAACAACTGGAGGACAACTTGATGGA
genomic: TGCCTCCATATCCACCATAGAAAGGAGGGCGAGCCTGAAGGAATTCTACAgtatgcttac ... tggaatgcagCTATCATATACCCTTTCTTGCAACAACTGGAGGACAACTTGATGGA
EST: gi|28931313|gb|CB334674.1|CB334674
EST:     TGCCTCCATATCCACCATAGAAAGGAGGGCGAGCCTGAAGGAATTCTACA                         CTATCATATACCCTTTCTTGCAACAACTGGAGGACAACTTGATGGACAAGG
genomic: TGCCTCCATATCCACCATAGAAAGGAGGGCGAGCCTGAAGGAATTCTACAgtatgcttac ... tggaatgcagCTATCATATACCCTTTCTTGCAACAACTGGAGGACAACTTGATGGACAAGG
EST: gi|211425705|gb|FL364983.1|FL364983
EST:     TGCCTCTATATCCACCATAGAAAGGAGGGCGAGCCTGAAGGAATTCTACA                         CTATCATATACCCTTTCTTGCAACAACTTGAGGACAACTTGATGGACAAGG
genomic: TGCCTCCATATCCACCATAGAAAGGAGGGCGAGCCTGAAGGAATTCTACAgtatgcttac ... tggaatgcagCTATCATATACCCTTTCTTGCAACAACTGGAGGACAACTTGATGGACAAGG
EST: gi|211144877|gb|FL420891.1|FL420891
EST:     TGCCTCCATATCCACCATAGAAAGGAGGGCGAGCCTGAAGGAATTCTACA                         CTATCATATACCCTTTCTTGCAACAACTGGAGGACAACTTGATGGACAAGG
genomic: TGCCTCCATATCCACCATAGAAAGGAGGGCGAGCCTGAAGGAATTCTACAgtatgcttac ... tggaatgcagCTATCATATACCCTTTCTTGCAACAACTGGAGGACAACTTGATGGACAAGG
EST: gi|211213423|gb|FL335729.1|FL335729
EST:     TGCCTCCATATCCACCATAGAAAGGARGGCGAGCCTGAAGGAATTCTACA                         CTATCATATACCCTTTCTTGCAACAACTGGAGGACAACTTGATGGACAAGG
genomic: TGCCTCCATATCCACCATAGAAAGGAGGGCGAGCCTGAAGGAATTCTACAgtatgcttac ... tggaatgcagCTATCATATACCCTTTCTTGCAACAACTGGAGGACAACTTGATGGACAAGG
EST: gi|211282867|gb|FL309979.1|FL309979
EST:     TGCCTCCATATCCACCATAGAAAGGAGGGCGAGCCTGAAGGAATTCTACA                         CTATCATATACCCTTTCTTGCAACAACTGGAGGACAACTTGATGGACAAGG
genomic: TGCCTCCATATCCACCATAGAAAGGAGGGCGAGCCTGAAGGAATTCTACAgtatgcttac ... tggaatgcagCTATCATATACCCTTTCTTGCAACAACTGGAGGACAACTTGATGGACAAGG
EST: gi|50325950|gb|CO521076.1|CO521076
EST:     TGCCTCCATATCCACCATAGAAAGGAGGGCGAGCCTGAAGGAATTCTACA                         CTATCATATACCCTTTCTTGCAACAACTGGAGGACAACTTGATGGACAAGG
genomic: TGCCTCCATATCCACCATAGAAAGGAGGGCGAGCCTGAAGGAATTCTACAgtatgcttac ... tggaatgcagCTATCATATACCCTTTCTTGCAACAACTGGAGGACAACTTGATGGACAAGG
EST: gi|211185710|gb|FL321585.1|FL321585
EST:     TGCCTCTATATCCACCATAGAAAGGAGGGCGAGCCTGAAGGAATTCTACA                         CTATCATATACCCTTTCTTGCAACAACTTGAGGACAACTTGATGGACAAGG
genomic: TGCCTCCATATCCACCATAGAAAGGAGGGCGAGCCTGAAGGAATTCTACAgtatgcttac ... tggaatgcagCTATCATATACCCTTTCTTGCAACAACTGGAGGACAACTTGATGGACAAGG
EST: gi|211086863|gb|FL356810.1|FL356810
EST:     TGCCTCCATATCCACCATAGAAAGGAGGGCGAGCCTGAAGGAATTCTACA                         CTATCATATANCCTTTCTTGCAACAACTGGAGGACAACTTGATGGACAAGG
genomic: TGCCTCCATATCCACCATAGAAAGGAGGGCGAGCCTGAAGGAATTCTACAgtatgcttac ... tggaatgcagCTATCATATACCCTTTCTTGCAACAACTGGAGGACAACTTGATGGACAAGG
EST: gi|211453267|gb|FL341700.1|FL341700
EST:     TGCCTCTATATCCACCATAGAAAGGAGGGCGAGCCTGAAGGAATTCTACA                         CTATCATATACCCTTTCTTGCAACAACTTGAGGACAACTTGATGGACAAGG
genomic: TGCCTCCATATCCACCATAGAAAGGAGGGCGAGCCTGAAGGAATTCTACAgtatgcttac ... tggaatgcagCTATCATATACCCTTTCTTGCAACAACTGGAGGACAACTTGATGGACAAGG
EST: gi|148930523|gb|EE285118.2|EE285118
EST:     TGCCTCCATATCCACCATAGAAAGGAGGGCGAGCCTGAAGGAATTCTACA                         CTATCATATACCCTTTCTTGCAACAACTGGAGGACAACTTGATGGACAAGG
genomic: TGCCTCCATATCCACCATAGAAAGGAGGGCGAGCCTGAAGGAATTCTACAgtatgcttac ... tggaatgcagCTATCATATACCCTTTCTTGCAACAACTGGAGGACAACTTGATGGACAAGG
EST: gi|211021655|gb|FL358094.1|FL358094
EST:     TGCCTCCATATCCACCATAGAAAGGAGGGCGAGCCTGAAGGAATTCTACA                         CTATCATATACCCTTTCTTGCAACAACTGGAGGACAACTTGATGGACAAGG
genomic: TGCCTCCATATCCACCATAGAAAGGAGGGCGAGCCTGAAGGAATTCTACAgtatgcttac ... tggaatgcagCTATCATATACCCTTTCTTGCAACAACTGGAGGACAACTTGATGGACAAGG
EST: gi|211180683|gb|FL313564.1|FL313564
EST:     TGCCTCCATATCCACCATAGAAAGGAGGGCGAGCCTGAAGGAATTCTACA                         CTATCATATACCCTTTCTTGCAACAACTGGAGGACAACTTGATGGACAAGG
genomic: TGCCTCCATATCCACCATAGAAAGGAGGGCGAGCCTGAAGGAATTCTACAgtatgcttac ... tggaatgcagCTATCATATACCCTTTCTTGCAACAACTGGAGGACAACTTGATGGACAAGG
EST: gi|108824167|gb|EC278175.1|EC278175
EST:     TGCCTCCATATCCACCATAGAAAGGAGGGCGAGCCTGAAGGAATTCTACA                         CTATCATATACCCTTTCTTGCAACAACTGGAGGACAACTTGATGGACAAGG
genomic: TGCCTCCATATCCACCATAGAAAGGAGGGCGAGCCTGAAGGAATTCTACAgtatgcttac ... tggaatgcagCTATCATATACCCTTTCTTGCAACAACTGGAGGACAACTTGATGGACAAGG
EST: gi|211398188|gb|FL404159.1|FL404159
EST:     TGCCTCCATATCCACCATAGAAAGGAGGGCGAGCCTGAAGGAATTCTACA                         CTATCATATACCCTTTCTTGCAACAACTGGAGGACAACTTGAT
genomic: TGCCTCCATATCCACCATAGAAAGGAGGGCGAGCCTGAAGGAATTCTACAgtatgcttac ... tggaatgcagCTATCATATACCCTTTCTTGCAACAACTGGAGGACAACTTGAT
EST: gi|211147996|gb|FL325032.1|FL325032
EST:     WGCCTCTATATCCACCATAGAAAGGAGGGCGAGCCTGAAGGAATTCTACA                         CTATCATATACCCTTTCTTGCAACAACTTGAGG
genomic: TGCCTCCATATCCACCATAGAAAGGAGGGCGAGCCTGAAGGAATTCTACAgtatgcttac ... tggaatgcagCTATCATATACCCTTTCTTGCAACAACTGGAGG
EST: gi|211173505|gb|FL323750.1|FL323750
EST:     TGCCTCCATATCCACCATAGAAAGGARGGCGAGCCTGAAGGAATTCTACA                         CTATCATATACCCT
genomic: TGCCTCCATATCCACCATAGAAAGGAGGGCGAGCCTGAAGGAATTCTACAgtatgcttac ... tggaatgcagCTATCATATACCCT
EST: gi|149109824|gb|EE293619.2|EE293619
EST:     TGCCTCCATATCCACCATAGAAAGGAGGGCGAGCCTGAAGGAATTCTACA                         CTATCATATACCCTTTCTTGCAACAACTGGAGGACAACTTGATGGACAAGG
genomic: TGCCTCCATATCCACCATAGAAAGGAGGGCGAGCCTGAAGGAATTCTACAgtatgcttac ... tggaatgcagCTATCATATACCCTTTCTTGCAACAACTGGAGGACAACTTGATGGACAAGG
EST: gi|211335091|gb|FL315546.1|FL315546
EST:     TGCCTCCATATCCACCATAGAAAGGAGGGCGAGCCTGAAGGAATTCTACA                         CTATCATATACCCTTTCTTGCAACAACTGGAGGACAACTTGATGGACAAGG
genomic: TGCCTCCATATCCACCATAGAAAGGAGGGCGAGCCTGAAGGAATTCTACAgtatgcttac ... tggaatgcagCTATCATATACCCTTTCTTGCAACAACTGGAGGACAACTTGATGGACAAGG
EST: gi|211529046|gb|FL347500.1|FL347500
EST:     TGCCTCCATATCCACCATAGAAAGGAGGGCGAGCCTGAAGGAATTCTACA                         CTATCATATACCCTTTCTTGCAACAACTGGAGGACAACTTGATGGACAAGG
genomic: TGCCTCCATATCCACCATAGAAAGGAGGGCGAGCCTGAAGGAATTCTACAgtatgcttac ... tggaatgcagCTATCATATACCCTTTCTTGCAACAACTGGAGGACAACTTGATGGACAAGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTTATGTCGATGAAGATGCCTCCATATCCACCATAGAAAGGAGGGCGAGCCTGAAGGAATTCTACAgtatgcttactatccaccatagaaactagtgattaagaagctttttttttctgttcaagatttttttttgttgatgctgctgctgctgctgcagcagtggtttaatatagttttgggaccccatggaatgcag

- - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA