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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGGGTGCTGGAAAGCAAAGCTGCCAGCAGGACGTGGTAGGGAGGCTGCAAGTGCTCATGATCTCGACGCCCAAGCGGAGCGATCTCATCTTCCCAAAGgtgatcgtcgcacgcgcgcagcaagatcgatcagatcgatggccataccatactcgccctttaatcaatcatgtgtaaagaatacgaataatatacagtactgtatatatacgacaatatattaattgctcaataatgtataggaatgtgttgctgcag

Basic information

species Zea mays
transcript GRMZM2G057963_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G057963_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os11g32750.1 (Oryza sativa), 5'ss of exon 3
GGAGGGTGCTGGAAAGCAAAGCTGCCAGCAGGACGTGGTAGGGAGGCTGCAAGTGCTCATGATCTCGACGCCCAAGCGGAGCGATCTCATCTTCCCAAAGgtgatcgtcgcacgcgcgcagcaagatcgatcagatcgatggccataccatactcgccctttaatcaatcatgtgta-aagaatacgaataatatacagtactgtatatatacgacaatatattaattgctcaataatgtataggaatgtgttgctgcag
  |  |     |    |         |  |  | ||| | |  ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||  | | |   |    ||||| | | |  | | | |   | |||  ||  ||  | | |    || ||   |   ||  || |    || | | | | |||                                                        
AAACAGCAGCAGCTCCCTTCAAGATGATGATCATGTGCTGGAAAGGCTGCAAGTGCTCATGATCTCGACGCCGAAGCGAAGCGATCTCATCTTCCCAAAGgtgagagaccc---caattagcaacagcaacaacaacaacaacaatatgatgatcatcatatgcaaaagcacaagcccaatcatgcatccaaaaaagaat-ctg--------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74233575|gb|DT641489.1|DT641489
EST:     AAGTGCTCATGATCTCGACGCCCAAGCGGAGCGATCTCATCTTCCCAAAG                         GGTGGATGGGAGGACGACGAGAGCATCGACGAAGCTGCCAGCAGGGAGGCC
genomic: AAGTGCTCATGATCTCGACGCCCAAGCGGAGCGATCTCATCTTCCCAAAGgtgatcgtcg ... gttgctgcagGGTGGATGGGAGGACGACGAGAGCATCGACGAAGCTGCCAGCAGGGAGGCC
EST: gi|78075588|gb|DV504022.1|DV504022
EST:     AAGTGCTCATGATCTCGACGCCCAAGCGGAGCGATCTCATCTTCCCAAAG                         GGTGGATGGGAGGACGACGAGAGCATCGACGAAGCTGCCAGCAGGGAGGCC
genomic: AAGTGCTCATGATCTCGACGCCCAAGCGGAGCGATCTCATCTTCCCAAAGgtgatcgtcg ... gttgctgcagGGTGGATGGGAGGACGACGAGAGCATCGACGAAGCTGCCAGCAGGGAGGCC