1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TTCCTGAAGGTTCAGAAGAATGGTACGGGCGAGCATCTGCCCCCACCCAGGCCAAAACGAAAGGCAGCTCATCCATATCCACAGAAGGCATCTAAAAATGgtttgtattattcaagtacctagctatttgggactttttttttctagtttacgagtgatgactagacctatttag
species | Zea mays |
transcript | GRMZM2G057408_T02 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GCCAAAACGAAAGGCAGCTCATCCATATCCACAGAAGGCATCTAAAAATG -T--T----T--CTCAAGCTATCTTATCACAAGAACAACCTACCCAGAGGGEST: gi|91876492|gb|EB406449.1|EB406449
genomic: GCCAAAACGAAAGGCAGCTCATCCATATCCACAGAAGGCATCTAAAAATGgtttgtatta ... acctatttagCTCCTGCAGTTTCTCAAGCTATTTTATCACAAGAACAACCTACCCAGAGGG
EST: GCCAAAACGAAAGGCAGCTCATCCATATCCACAGAAGGCATCTAAAAATG -T--T----T--CTCAAGCTATTTTATCACAAGAACAACCTACCCAGAGGGEST: gi|50336085|gb|CO531211.1|CO531211
genomic: GCCAAAACGAAAGGCAGCTCATCCATATCCACAGAAGGCATCTAAAAATGgtttgtatta ... acctatttagCTCCTGCAGTTTCTCAAGCTATTTTATCACAAGAACAACCTACCCAGAGGG
EST: GCCAAAACGAAAGGCAGCTCATCCATATCCACAGAAGGCATCTAAAAATG -T--T----T--CTCAAGCTATTTTATCACAAGAACAACCTACCCAGAGGGEST: gi|89755460|gb|DY685870.1|DY685870
genomic: GCCAAAACGAAAGGCAGCTCATCCATATCCACAGAAGGCATCTAAAAATGgtttgtatta ... acctatttagCTCCTGCAGTTTCTCAAGCTATTTTATCACAAGAACAACCTACCCAGAGGG
EST: GCCAAAACGAAAGGCAGCTCATCCATATCCACAGAAGGCATCTAAAAATG -T--T----T--CTCAAGCTATTTTATCACAAGAACAACCTACCCAGAGGGEST: gi|78118283|gb|DV536669.1|DV536669
genomic: GCCAAAACGAAAGGCAGCTCATCCATATCCACAGAAGGCATCTAAAAATGgtttgtatta ... acctatttagCTCCTGCAGTTTCTCAAGCTATTTTATCACAAGAACAACCTACCCAGAGGG
EST: GCCAAAACGAAAGGCAGCTCATCCATATCCACAGAAGGCATCTAAAAATG CTCCTGCAGTTTCTCAAGCTATTTTATCACAAGAACAACCTACCCAGAGGGEST: gi|89757689|gb|DY687184.1|DY687184
genomic: GCCAAAACGAAAGGCAGCTCATCCATATCCACAGAAGGCATCTAAAAATGgtttgtatta ... acctatttagCTCCTGCAGTTTCTCAAGCTATTTTATCACAAGAACAACCTACCCAGAGGG
EST: GCCAAAACGAAAGGCAGCTCATCCATATCCACAGAAGGCATCTAAAAATG -T--T----T--CTCAAGCTATTTTATCACAAGAACAACCTACCCAGAGGGEST: gi|78076508|gb|DV504942.1|DV504942
genomic: GCCAAAACGAAAGGCAGCTCATCCATATCCACAGAAGGCATCTAAAAATGgtttgtatta ... acctatttagCTCCTGCAGTTTCTCAAGCTATTTTATCACAAGAACAACCTACCCAGAGGG
EST: GCCAAAACGAAAGGCAGCTCATCCATATCCACAGAAGGCATCTAAAAATG -T--T----T--CTCAAGCTATTTTATCACAAGAACAACCTACCCAGAGGGEST: gi|148956892|gb|EC902815.2|EC902815
genomic: GCCAAAACGAAAGGCAGCTCATCCATATCCACAGAAGGCATCTAAAAATGgtttgtatta ... acctatttagCTCCTGCAGTTTCTCAAGCTATTTTATCACAAGAACAACCTACCCAGAGGG
EST: GCCAAAACGAAAGGCAGCTCATCCATATCCACAGAAGGCATCTAAAAATG -T--T----T--CTCAAGCTATTTTATCACAAGAACAACCTACCCAGAGGGEST: gi|71441161|gb|DR822211.1|DR822211
genomic: GCCAAAACGAAAGGCAGCTCATCCATATCCACAGAAGGCATCTAAAAATGgtttgtatta ... acctatttagCTCCTGCAGTTTCTCAAGCTATTTTATCACAAGAACAACCTACCCAGAGGG
EST: GCCAAAACGAAAGGCAGCTCATCCATATCCACAGAAGGCATCTAAAAATG -T--T----T--CTCAAGCTATTTTATCACAAGAACAACCTACCCAGAGGGEST: gi|71428977|gb|DR810027.1|DR810027
genomic: GCCAAAACGAAAGGCAGCTCATCCATATCCACAGAAGGCATCTAAAAATGgtttgtatta ... acctatttagCTCCTGCAGTTTCTCAAGCTATTTTATCACAAGAACAACCTACCCAGAGGG
EST: GCCAAAACGAAAGGCAGCTCATCCATATCCACAGAAGGCATCTAAAAATG -T--T----T--CTCAAGCTATTTTATCACAAGAACAACCTACCCAGAGGG
genomic: GCCAAAACGAAAGGCAGCTCATCCATATCCACAGAAGGCATCTAAAAATGgtttgtatta ... acctatttagCTCCTGCAGTTTCTCAAGCTATTTTATCACAAGAACAACCTACCCAGAGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCCTGAAGGTTCAGAAGAATGGTACGGGCGAGCATCTGCCCCCACCCAGGCCAAAACGAAAGGCAGCTCATCCATATCCACAGAAGGCATCTAAAAATGgtttgtattattcaagtacctagctatttgggactttttttttctagtttacgagtgatgactagacctatttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA