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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGGACAAAAGAAAGATCTATGGTCACCCTTGCCATATCAGGGGTGGAAACCATGCTTAACGCCATCAGTTTCTCACAgtaatttacttcttttatgtgatgatgaaacatagttcctcttcctgttgaagaaattaattaattaaacatcttttattttaatgttag

Basic information

species Zea mays
transcript GRMZM2G057037_T02
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211458006|gb|FL008445.1|FL008445
EST:     CTTGCCATATCAGGGGTGGAAACCATGCTTAACGCCATCAGTTTCTCACA                         AATTACCTCTGGAACCAAGTGGATACATCCAAGTATTTCTTGATGGTGGAT
genomic: CTTGCCATATCAGGGGTGGAAACCATGCTTAACGCCATCAGTTTCTCACAgtaatttact ... ttaatgttagAATTACCTCTGGAACCAAGTGGATACATCCAAGTATTTCTTGATGGTGGAT
EST: gi|76932287|gb|DV172995.1|DV172995
EST:     CTTGCCATATCAGGGGTGGAAACCATGCTTAACGCCATCAGTTTCTCACA                         AATTACCTCTGGAACCAAGTGGATACATCCAAGTATTTCTTGATGGTGGAT
genomic: CTTGCCATATCAGGGGTGGAAACCATGCTTAACGCCATCAGTTTCTCACAgtaatttact ... ttaatgttagAATTACCTCTGGAACCAAGTGGATACATCCAAGTATTTCTTGATGGTGGAT
EST: gi|148946102|gb|EC891397.2|EC891397
EST:     CTTGCCGTATCAGGGGTGGAAACCATGCTTAACGCCATCAGTTTCTCACA                         AATTACCTCTGGAACCAAGTGGATACATCCAAGTATTTCTTGATGGTGGAT
genomic: CTTGCCATATCAGGGGTGGAAACCATGCTTAACGCCATCAGTTTCTCACAgtaatttact ... ttaatgttagAATTACCTCTGGAACCAAGTGGATACATCCAAGTATTTCTTGATGGTGGAT
EST: gi|211460518|gb|FL008446.1|FL008446
EST:     CTTGCCATATCAGGGGTGGAAACCATGCTTAACGCCATCAGTTTCTCACA                         AATTACCTCTGGAACCAAGTGGATACATCCAAGTATTTCTTGATGGTGGAT
genomic: CTTGCCATATCAGGGGTGGAAACCATGCTTAACGCCATCAGTTTCTCACAgtaatttact ... ttaatgttagAATTACCTCTGGAACCAAGTGGATACATCCAAGTATTTCTTGATGGTGGAT
EST: gi|71330647|gb|DR802098.1|DR802098
EST:     CTTGCCATATCAGGGGTGGAAACCATGCTTAACGCCATCAGTTTCTCACA                         AATTACCTCTGGAACCAAGTGGATACATCCAAGTATTTCTTGATGGTGGAT
genomic: CTTGCCATATCAGGGGTGGAAACCATGCTTAACGCCATCAGTTTCTCACAgtaatttact ... ttaatgttagAATTACCTCTGGAACCAAGTGGATACATCCAAGTATTTCTTGATGGTGGAT
EST: gi|149076222|gb|EE164820.2|EE164820
EST:     CTTGCCATATCAGGGGTGGAAACCATGCTTAACGCCATCAGTTTCTCACA                         AATTACCTCTGGAACCAAGTGGATACATCCAAGTATTTCTTGATGGTGGAT
genomic: CTTGCCATATCAGGGGTGGAAACCATGCTTAACGCCATCAGTTTCTCACAgtaatttact ... ttaatgttagAATTACCTCTGGAACCAAGTGGATACATCCAAGTATTTCTTGATGGTGGAT
EST: gi|148971509|gb|EE022208.2|EE022208
EST:     CTTGCCATATCAGGGGTGGAAACCATGCTTAACGCCATCAGTTTCTCACA                         AATTACCTCTGGAACCAAGTGGATACATCCAAGTATTTCTTGATGGTGGAT
genomic: CTTGCCATATCAGGGGTGGAAACCATGCTTAACGCCATCAGTTTCTCACAgtaatttact ... ttaatgttagAATTACCTCTGGAACCAAGTGGATACATCCAAGTATTTCTTGATGGTGGAT
EST: gi|211460519|gb|FL008447.1|FL008447
EST:     CTTGCCATATCAGGGGTGGAAACCATGCTTAACGCCATCAGTTTCTCACA                         AATTACCTCTGGCAAC-AAGTGGATACATCCAAGTATTTCTTTGATGGTGG
genomic: CTTGCCATATCAGGGGTGGAAACCATGCTTAACGCCATCAGTTTCTCACAgtaatttact ... ttaatgttagAATTACCTCTGG-AACCAAGTGGATACATCCAAGTATTTCTT-GATGGTGG
EST: gi|211458005|gb|FL008444.1|FL008444
EST:     CTTGCCATATCAGGGGTGGAAACCATGCTTAACGCCATCAGTTTCTCACA                         AATTACCTCTGGAACCAAGTGGATAYATCCAAGTATTTCTTGATGGTGGAT
genomic: CTTGCCATATCAGGGGTGGAAACCATGCTTAACGCCATCAGTTTCTCACAgtaatttact ... ttaatgttagAATTACCTCTGGAACCAAGTGGATACATCCAAGTATTTCTTGATGGTGGAT
EST: gi|148967100|gb|EE018271.2|EE018271
EST:     CTTGCCATATCAGGGGTGGAAACCATGCTTAACGCCATCAGTTTCTCACA                         AATTACCTCTGGAACCAAGTGGATACATCCAAGTATTTCTTGATGGTGGAT
genomic: CTTGCCATATCAGGGGTGGAAACCATGCTTAACGCCATCAGTTTCTCACAgtaatttact ... ttaatgttagAATTACCTCTGGAACCAAGTGGATACATCCAAGTATTTCTTGATGGTGGAT
EST: gi|76925903|gb|DV170641.1|DV170641
EST:     CTTGCCATATCAGGGGTGGAAACCATGCTTAACGCCATCAGTTTCTCACA                         AATTACCTCTGGAACCAAGTGGATACATCCAAGTATTTCTTGATGGTGGAT
genomic: CTTGCCATATCAGGGGTGGAAACCATGCTTAACGCCATCAGTTTCTCACAgtaatttact ... ttaatgttagAATTACCTCTGGAACCAAGTGGATACATCCAAGTATTTCTTGATGGTGGAT
EST: gi|74236036|gb|DT643950.1|DT643950
EST:     CTTGCCATATCAGGGGTGGAAACCATGCTTAACGCCATCAGTTTCTCACA                         AATTACCTCTGGAACCAAGTGGATACATCCAAGTATTTCTTGATGGTGGAT
genomic: CTTGCCATATCAGGGGTGGAAACCATGCTTAACGCCATCAGTTTCTCACAgtaatttact ... ttaatgttagAATTACCTCTGGAACCAAGTGGATACATCCAAGTATTTCTTGATGGTGGAT
EST: gi|71449457|gb|DR830507.1|DR830507
EST:     CTTGCCATATCAGGGGTGGAAACCATGCTTAACGCCATCAGTTTCTCACA                         AATTACCTCTGGAACCAAGTGGATACATCCAAGTATTTCTTGATGGTGGAT
genomic: CTTGCCATATCAGGGGTGGAAACCATGCTTAACGCCATCAGTTTCTCACAgtaatttact ... ttaatgttagAATTACCTCTGGAACCAAGTGGATACATCCAAGTATTTCTTGATGGTGGAT
EST: gi|71426736|gb|DR807786.1|DR807786
EST:     CTTGCCATATCAGGGGTGGAAACCATGCTTAACGCCATCAGTTTCTCACA                         AATTACCTCTGGAACCAAGTGGATACATCCAAGTATTTCTTGATGGTGGAT
genomic: CTTGCCATATCAGGGGTGGAAACCATGCTTAACGCCATCAGTTTCTCACAgtaatttact ... ttaatgttagAATTACCTCTGGAACCAAGTGGATACATCCAAGTATTTCTTGATGGTGGAT
EST: gi|31359449|gb|CD443806.1|CD443806
EST:     CTTGCCATATCAGGGGTGGAAACCATGCTTAACGCCATCAGTTTCTCACA                         AATTACCTCTGGAACCAAGTGGATACATCCGGGGATTTCTTGATGGTGGAT
genomic: CTTGCCATATCAGGGGTGGAAACCATGCTTAACGCCATCAGTTTCTCACAgtaatttact ... ttaatgttagAATTACCTCTGGAACCAAGTGGATACATCCAAGTATTTCTTGATGGTGGAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACGGACAAAAGAAAGATCTATGGTCACCCTTGCCATATCAGGGGTGGAAACCATGCTTAACGCCATCAGTTTCTCACAgtaatttacttcttttatgtgatgatgaaacatagttcctcttcctgttgaagaaattaattaattaaacatcttttattttaatgttag

- - - - - - - - - - - - - - - - - - - - - GGTGGA