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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAATGCAGCTGTACAAGTACCCATAGGATTAGAAGAGGAGTTTGAGGGCCTTGTTGACCTTGTAGAAATGAAGGCTTATAAGTTCGAGGGATCTAGTGGgtgagtcttactctattgagaattaaatactccaggctatttgttttattgaatcctgaatgatgcatctcatttgcatatgcag

Basic information

species Zea mays
transcript GRMZM2G056393_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G056393_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os03g36780.1 (Oryza sativa), 5'ss of exon 3
ACAATGCAGCTGTACAAGTACCCATAGGATTAGAAGAGGAGTTTGAGGGCCTTGTTGACCTTGTAGAAATGAAGGCTTATAAGTTCGAGGGATCTAGTGGgtgagtcttactctattgagaattaaatactcc--aggctatttgttttattgaatcctgaatgatgcat-----ctcat-ttgcatatgcag
|||||||||||||||| || || |||||||||||||| |||||||| ||||| || || ||||| ||  ||||||||||||||||||||||   ||||||||| |||    |   ||   | ||    || |   ||| ||| ||  || | ||    | ||| |   |      ||||| ||  || |||||
ACAATGCAGCTGTACAGGTGCCGATAGGATTAGAAGAAGAGTTTGAAGGCCTGGTGGATCTTGTGGAGTTGAAGGCTTATAAGTTCGAGGGTGGTAGTGGgtgcgtccctgttctttacaagttcttcaccctgaaggttatgtgcatt-tggatatttcaataacatacctagcctcatgtttaatgtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22491486|gb|BU051409.1|BU051409
EST:     CTTGTTGACCTTGTAGAAATGAAGGCTTATAAGTTCGAGGGATCTAGTGG                         CCAGAATGTAACTGCTTCTGATGTTCCATTGAATATGGAGGATTTAGTCAC
genomic: CTTGTTGACCTTGTAGAAATGAAGGCTTATAAGTTCGAGGGATCTAGTGGgtgagtctta ... gcatatgcagCCAGAATGTAACTGCTTCTGATGTTCCATTGAATATGGAGGATTTAGTCAC
EST: gi|67019503|gb|CO448252.1|CO448252
EST:     CTTGTTGACCTTGTAGAAATGAAGGCTTATAAGTTCGAGGGATCTAGTGG                         CCAGAATGTAACTGCTTCTGATGTTCCATTGAATATGGAGGATTTAGTCAC
genomic: CTTGTTGACCTTGTAGAAATGAAGGCTTATAAGTTCGAGGGATCTAGTGGgtgagtctta ... gcatatgcagCCAGAATGTAACTGCTTCTGATGTTCCATTGAATATGGAGGATTTAGTCAC
EST: gi|19436218|gb|BM952628.1|BM952628
EST:     CTTGTTGACCTTGTAGAAATGAAGGCTTATAAGTTCGAGGGATCTAGTGG                         CCAGAATGTAACTGCTTCTGATGTTCCATTGAATATGGAGGATTTAGTCAC
genomic: CTTGTTGACCTTGTAGAAATGAAGGCTTATAAGTTCGAGGGATCTAGTGGgtgagtctta ... gcatatgcagCCAGAATGTAACTGCTTCTGATGTTCCATTGAATATGGAGGATTTAGTCAC
EST: gi|19351127|gb|BM895659.1|BM895659
EST:     TGTAGAAATGAAGGCTTATAAGTTCGAGGGATCTAGTGG                         CCAGAATGTAACTGCTTCTGATGTTCCATTGAATATGGAGGATTTAGTCAC
genomic: TGTAGAAATGAAGGCTTATAAGTTCGAGGGATCTAGTGGgtgagtctta ... gcatatgcagCCAGAATGTAACTGCTTCTGATGTTCCATTGAATATGGAGGATTTAGTCAC
EST: gi|32931849|gb|CF036661.1|CF036661
EST:     CTTGTTGACCTTGTAGAAATGAAGGCTTATAAGTTCGAGGGATCTAGTGG                         CCAGAATGTAACTGCTTCTGATGTTCCATTGAATATGGAGGATTTAGTCAC
genomic: CTTGTTGACCTTGTAGAAATGAAGGCTTATAAGTTCGAGGGATCTAGTGGgtgagtctta ... gcatatgcagCCAGAATGTAACTGCTTCTGATGTTCCATTGAATATGGAGGATTTAGTCAC
EST: gi|87154041|gb|DY398830.1|DY398830
EST:     CTTGTTGACCTTGTAGAAATGAAGGCTTATAAGTTCGAGGGATCTAGTGG                         CCAGAATGTAACTGCTTCTGATGTTCCATTGAATATGGAGGATTTAGTCAC
genomic: CTTGTTGACCTTGTAGAAATGAAGGCTTATAAGTTCGAGGGATCTAGTGGgtgagtctta ... gcatatgcagCCAGAATGTAACTGCTTCTGATGTTCCATTGAATATGGAGGATTTAGTCAC
EST: gi|31353864|gb|CD438221.1|CD438221
EST:     CTTGTTGACCTTGTAGAAATGAAGGCTTATAAGTTCGAGGGATCTAGTGG                         CCAGAATGTAACTGCTTCTGATGTTCCATTGAAT
genomic: CTTGTTGACCTTGTAGAAATGAAGGCTTATAAGTTCGAGGGATCTAGTGGgtgagtctta ... gcatatgcagCCAGAATGTAACTGCTTCTGATGTTCCATTGAAT
EST: gi|118406757|gb|EH038205.1|EH038205
EST:     CTTGTTGACCTTGTAGAAATGAAGGCTTATAAGTTCGAGGGATCTAGTGG                         CCAGAATGTAACTGCTTCTGATGTTCCATTGAATATGGAGGATTTAGTCAC
genomic: CTTGTTGACCTTGTAGAAATGAAGGCTTATAAGTTCGAGGGATCTAGTGGgtgagtctta ... gcatatgcagCCAGAATGTAACTGCTTCTGATGTTCCATTGAATATGGAGGATTTAGTCAC