1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTGTATGGCAATGGGAAGATTGGATCTCAGTTGCCAACTCGAGGAACATATGATCAGCTATTAGAAAGACAGgtagttgcatatgaagtgttctttttgttctggtgcgtatgaggtgttatgatgtcgtactagcacaagggttatttttctttttaaagttcacacttct...
species | Zea mays |
transcript | GRMZM2G055917_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AACATATGATCAGCTATTAGAAAGACAG AAAGAACATGTACAGCAATTCTTGGCAACAGAAGATGCTTTGAACAAAGCTEST: gi|211307883|gb|FL435243.1|FL435243
genomic: AACATATGATCAGCTATTAGAAAGACAGgtagttgcat ... tgcctttcagAAAGAACATGTACAGCAATTCTTGGCAACAGAAGATGCTTTGAACAAAGCT
EST: GATCTCAGTTGCCAACTCGAGGAACATATGATCAGCTATTAGAAAGACAG AAAGAACATGTACAGCAATTCTTGGCAACAGAAGATGCTTTGAACAAAGCTEST: gi|211028057|gb|FL201181.1|FL201181
genomic: GATCTCAGTTGCCAACTCGAGGAACATATGATCAGCTATTAGAAAGACAGgtagttgcat ... tgcctttcagAAAGAACATGTACAGCAATTCTTGGCAACAGAAGATGCTTTGAACAAAGCT
EST: GATCTCAGTTGCCAACTCGAGGAACATATGATCAGCTATTAGAAAGACAG AAAGAACATGTACAGCAATTCTTGGCAACAGAAGATGCTTTGAACAAAGCT
genomic: GATCTCAGTTGCCAACTCGAGGAACATATGATCAGCTATTAGAAAGACAGgtagttgcat ... tgcctttcagAAAGAACATGTACAGCAATTCTTGGCAACAGAAGATGCTTTGAACAAAGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGTATGGCAATGGGAAGATTGGATCTCAGTTGCCAACTCGAGGAACATATGATCAGCTATTAGAAAGACAGgtagttgcatatgaagtgttctttttgttctggtgcgtatgaggtgttatgatgtcgtactagcacaagggttatttttctttttaaagttcacacttct
- - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT