1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ATAGTCGAGAAGAACAAAGGGACGATATTTGCAGAAAGCCTTATGTGCCGTATGAGGAGCTCAGTTATGTGCACTTTCCAAAACCTACAAGTTATAGCAGgtaagatccaccacttgactgtgaggagatataaaatctttgcattcctcaattatgtagtacagtatattttgtggctgatgttgatattttttgtctttctgctgcag
species | Zea mays |
transcript | GRMZM2G055607_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TATGAGGAGCTCAGTTATGTGCACTTTCCAAAACCTACAAGTTATAGCAG GGGGGAGTGCTCGTGTACTCCTGTTCGGTTCTTTGTAATCGTGTCTATGCAEST: gi|31441050|gb|CD510481.1|CD510481
genomic: TATGAGGAGCTCAGTTATGTGCACTTTCCAAAACCTACAAGTTATAGCAGgtaagatcca ... tctgctgcagGGGGGAGTGCTCGTGTACTCCTGTTCGGTTCTTTGTAATCGTGTCTATGCA
EST: TATGAGGAGCTCAGTTATGTGCACTTTCCAAAACCTACAAGTTATAGCAG GGGGGAGTGCTCGTGTACTCCTGTTCGGTTCTTTGTAATCGTGTCTATGCAEST: gi|76911991|gb|DV164525.1|DV164525
genomic: TATGAGGAGCTCAGTTATGTGCACTTTCCAAAACCTACAAGTTATAGCAGgtaagatcca ... tctgctgcagGGGGGAGTGCTCGTGTACTCCTGTTCGGTTCTTTGTAATCGTGTCTATGCA
EST: TATGAGGAGCTCAGTTATGTGCACTTTCCAAAACCTACAAGTTATAGCAG GGGGGAGTGCTCGTGTACTCCTGTTCGGTTCTTTGTAATTGTGTCTATGCAEST: gi|71448567|gb|DR829617.1|DR829617
genomic: TATGAGGAGCTCAGTTATGTGCACTTTCCAAAACCTACAAGTTATAGCAGgtaagatcca ... tctgctgcagGGGGGAGTGCTCGTGTACTCCTGTTCGGTTCTTTGTAATCGTGTCTATGCA
EST: ATGAGGAGCTCAGTTATGTGCACTTTCCAAAACCTACAAGTTTATAGCAG GGGGGAGTGCTCGTGTACTCCTGTTCGGTTCTTTGTAATCGTGTCTATGCEST: gi|88755485|gb|DY539626.1|DY539626
genomic: ATGAGGAGCTCAGTTATGTGCACTTTCCAAAACCTACAAGTT-ATAGCAGgtaagatcca ... tctgctgcagGGGGGAGTGCTCGTGTACTCCTGTTCGGTTCTTTGTAATCGTGTCTATGC
EST: TATGAGGAGCTCAGTTATGTGCACTTTCCAAAACCTACAAGTTATAGCAG GGGGGAGTGCTCGTGTACTCCTGTTCGGTTCTTTGTAATCGTGTCTATGCAEST: gi|50329390|gb|CO524516.1|CO524516
genomic: TATGAGGAGCTCAGTTATGTGCACTTTCCAAAACCTACAAGTTATAGCAGgtaagatcca ... tctgctgcagGGGGGAGTGCTCGTGTACTCCTGTTCGGTTCTTTGTAATCGTGTCTATGCA
EST: TATGAGGAGCTCAGTTATGTGCACTTTCCAAAACCTACAAGTTATAGCAG GGGGGAGTGCTCGTGTACTCCTGTTCGGTTCTTTGTAATCGTGTCTATGCAEST: gi|71437590|gb|DR818640.1|DR818640
genomic: TATGAGGAGCTCAGTTATGTGCACTTTCCAAAACCTACAAGTTATAGCAGgtaagatcca ... tctgctgcagGGGGGAGTGCTCGTGTACTCCTGTTCGGTTCTTTGTAATCGTGTCTATGCA
EST: TATGAGGAGCTCAGTTATGTGCACTTTCCAAAACCTACAAGTTATAGCAG GGGGGAGTGCTCGTGTACTCCTGTTCGGTTCTTTGTAATCGTGTCTATGCAEST: gi|211132575|gb|FL461421.1|FL461421
genomic: TATGAGGAGCTCAGTTATGTGCACTTTCCAAAACCTACAAGTTATAGCAGgtaagatcca ... tctgctgcagGGGGGAGTGCTCGTGTACTCCTGTTCGGTTCTTTGTAATCGTGTCTATGCA
EST: TATGAGGAGCTCAGTTATGTGCACTTTCCAAAACCTACAAGTTATAGCAG GGGGGAGTGCTCGTGTACTCCTGTTCGGTTCTTTGTAATCGTGTCTATGCAEST: gi|28987385|gb|CB351608.1|CB351608
genomic: TATGAGGAGCTCAGTTATGTGCACTTTCCAAAACCTACAAGTTATAGCAGgtaagatcca ... tctgctgcagGGGGGAGTGCTCGTGTACTCCTGTTCGGTTCTTTGTAATCGTGTCTATGCA
EST: TATGAGGAGCTCAGTTATGTGCACTTTCCAAAACCTACAAGTTATAGCAG GGGGGAGTGCTCGTGTACTCCTGTTCGGTTCTTTGTAATCEST: gi|71305861|gb|DR789056.1|DR789056
genomic: TATGAGGAGCTCAGTTATGTGCACTTTCCAAAACCTACAAGTTATAGCAGgtaagatcca ... tctgctgcagGGGGGAGTGCTCGTGTACTCCTGTTCGGTTCTTTGTAATC
EST: TATGAGGAGCTCAGTTATGTGCACTTTCCAAAACCTACAAGTTATAGCAG GGGGGAGTGCTCGTGTACTCCTGTTCGGTTCTTTGTAATCGTGTCTATGCAEST: gi|91871874|gb|EB401831.1|EB401831
genomic: TATGAGGAGCTCAGTTATGTGCACTTTCCAAAACCTACAAGTTATAGCAGgtaagatcca ... tctgctgcagGGGGGAGTGCTCGTGTACTCCTGTTCGGTTCTTTGTAATCGTGTCTATGCA
EST: TATGAGGAGCTCAGTTATGTGCACTTTCCAAAACCTACAAGTTATAGCAG GGGGGAGTGCTCGTGTACTCCTGTTCGGTTCTTTGTAATCGTGTCTATGCAEST: gi|74241101|gb|DT649015.1|DT649015
genomic: TATGAGGAGCTCAGTTATGTGCACTTTCCAAAACCTACAAGTTATAGCAGgtaagatcca ... tctgctgcagGGGGGAGTGCTCGTGTACTCCTGTTCGGTTCTTTGTAATCGTGTCTATGCA
EST: TATGAGGAGCTCAGTTATGTGCACTTTCCAAAACCTACAAGTTATAGCAG GGGGGAGTGCTCGTGTACTCCTGTTCGGTTCTTTGTAATCGTGTCTATGCAEST: gi|50330184|gb|CO525310.1|CO525310
genomic: TATGAGGAGCTCAGTTATGTGCACTTTCCAAAACCTACAAGTTATAGCAGgtaagatcca ... tctgctgcagGGGGGAGTGCTCGTGTACTCCTGTTCGGTTCTTTGTAATCGTGTCTATGCA
EST: TATGAGGAGCTCAGTTATGTGCACTTTCCAAAACCTACAAGTTATAGCAG GGGGGAGTGCTCGTGTACTCCTGTTCGGTTCTTTGTAATCGTGTCTATGCA
genomic: TATGAGGAGCTCAGTTATGTGCACTTTCCAAAACCTACAAGTTATAGCAGgtaagatcca ... tctgctgcagGGGGGAGTGCTCGTGTACTCCTGTTCGGTTCTTTGTAATCGTGTCTATGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATAGTCGAGAAGAACAAAGGGACGATATTTGCAGAAAGCCTTATGTGCCGTATGAGGAGCTCAGTTATGTGCACTTTCCAAAACCTACAAGTTATAGCAGgtaagatccaccacttgactgtgaggagatataaaatctttgcattcctcaattatgtagtacagtatattttgtggctgatgttgatattttttgtctttctgctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA