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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGAACGCGGAGCTGAAGATCGTCGACCCAGACACCAGCGCGTCGCTGGGACGGAACCAGCCAGGCGAGATATGCATCCGCGGCGAACAAATCATGAAAGgtaccgtccaaagctttcaccacttatggctagcgtggataaccttttttttcttcgagttattatgcacactaacgtcgaagagcgcacgtatataagc...

Basic information

species Zea mays
transcript GRMZM2G055320_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G055320_T03 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os06g44620.1 (Oryza sativa), 5'ss of exon 3
AGGAACGCGGAGCTGAAGATCGTCGACCCAGACACCAGCGCGTCGCTGGGACGGAACCAGCCAGGCGAGATATGCATCCGCGGCGAACAAATCATGAAAGgtaccgtccaaagctttcaccacttatggctagcgtggataaccttttttttcttcgagttattatgca--cactaacgtcgaagagcgcacgtatataagc-
|| |||||||||||||||||||| ||||| |||||| ||||  | || || ||||||||| | || ||||| |||||||| || |||||||||||||||||||  ||  |   |||||     ||     |    |  || |    | |  |||  | |  || |  ||  ||  | | ||   | |   | |   |      
AGAAACGCGGAGCTGAAGATCGTTGACCCTGACACCGGCGCCACCCTTGGCCGGAACCAGTCCGGGGAGATTTGCATCCGGGGAGAACAAATCATGAAAGgta--gtatatcactttctttttttcctcttcatata-atcattggtatcatctcggcgaaatcaatcattcatcatcttccccgtgtttatgggcacgctag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6587590|gb|AW244908.1|AW244908
EST:     ACGGAACCAGCCAGGCGAGATATGCATCCGCGGCGAACAAATCATGAAAG                         GTTATCTGAATGATCCAGAGGCGACAAAGAACACCATTGATAAGGACGGAT
genomic: ACGGAACCAGCCAGGCGAGATATGCATCCGCGGCGAACAAATCATGAAAGgtaccgtcca ... tgatgcgcagGTTATCTGAATGATCCAGAGGCGACAAAGAACACCATTGATAAGGACGGAT
EST: gi|211211872|gb|FL151947.1|FL151947
EST:     ACGGAACCAGCCAGGCGAGATATGCATCCGCGGCGAACAAATCATGAAAG                         GTTATCTGAATGATCCAGAGGCGACAAAGAACACCATTGATAAGGACGGAT
genomic: ACGGAACCAGCCAGGCGAGATATGCATCCGCGGCGAACAAATCATGAAAGgtaccgtcca ... tgatgcgcagGTTATCTGAATGATCCAGAGGCGACAAAGAACACCATTGATAAGGACGGAT
EST: gi|211365921|gb|FL274319.1|FL274319
EST:     ACGGAACCAGCCAGGCGAGATATGCATCCGCGGCGAACAAATCATGAAAG                         GTTATCTGAATGATCCAGAGGCGACAAAGAACACCATTGATAAGGACGGAT
genomic: ACGGAACCAGCCAGGCGAGATATGCATCCGCGGCGAACAAATCATGAAAGgtaccgtcca ... tgatgcgcagGTTATCTGAATGATCCAGAGGCGACAAAGAACACCATTGATAAGGACGGAT
EST: gi|211363276|gb|FL274312.1|FL274312
EST:     ACGGAACCAGCCAGGCGAGATATGCATCCGCGGCGAACAAATCATGAAAG                         GTTATCTGAATGATCCAGAGGCGACAAAGAACACCATTGATAAGGACGGAT
genomic: ACGGAACCAGCCAGGCGAGATATGCATCCGCGGCGAACAAATCATGAAAGgtaccgtcca ... tgatgcgcagGTTATCTGAATGATCCAGAGGCGACAAAGAACACCATTGATAAGGACGGAT
EST: gi|213188246|gb|FM188404.1|FM188404
EST:     ACGGAA-CAGCCAGGCGAGATACGCATCCGCGGCGAACAAATCATGAAAG                         GTTATCTGAATGATCCAGAGGCGACAAAGAACACC
genomic: ACGGAACCAGCCAGGCGAGATATGCATCCGCGGCGAACAAATCATGAAAGgtaccgtcca ... tgatgcgcagGTTATCTGAATGATCCAGAGGCGACAAAGAACACC
EST: gi|76911497|gb|DV164299.1|DV164299
EST:     ACGGAACCAGCCAGGCGAGATATGCATCCGCGGCGAACAAATCATGAAAG                         GTTATCTGAATGATCCAGAGGCGACAAAGAACACCATTGATAAGGACGGAT
genomic: ACGGAACCAGCCAGGCGAGATATGCATCCGCGGCGAACAAATCATGAAAGgtaccgtcca ... tgatgcgcagGTTATCTGAATGATCCAGAGGCGACAAAGAACACCATTGATAAGGACGGAT
EST: gi|211082093|gb|FL165107.1|FL165107
EST:     ACGGAACCAGCCAGGCGAGATATGCATCCGCGGCGAACAAATCATGAAAG                         GTTATCTGAATGATCCAGAGGCGACAAAGAACACCATTGATAAGGACGGAT
genomic: ACGGAACCAGCCAGGCGAGATATGCATCCGCGGCGAACAAATCATGAAAGgtaccgtcca ... tgatgcgcagGTTATCTGAATGATCCAGAGGCGACAAAGAACACCATTGATAAGGACGGAT
EST: gi|211365923|gb|FL274321.1|FL274321
EST:     ACGGAACCAGCCAGGCGAGATATGCATCCGCGGCGAACAAATCATGAAAG                         GTTATCTGAATGATCCAGAGGCGACAAAGAACACCATTGATAAGGACGGAT
genomic: ACGGAACCAGCCAGGCGAGATATGCATCCGCGGCGAACAAATCATGAAAGgtaccgtcca ... tgatgcgcagGTTATCTGAATGATCCAGAGGCGACAAAGAACACCATTGATAAGGACGGAT
EST: gi|211082090|gb|FL165104.1|FL165104
EST:     ACGGAACCAGCCAGGCGAGATATGCATCCGCGGCGAACAAATCATGAAAG                         GTTATCTGAATGATCCAGANGCGACAAAGAACACCATTGATAAGGACGGAT
genomic: ACGGAACCAGCCAGGCGAGATATGCATCCGCGGCGAACAAATCATGAAAGgtaccgtcca ... tgatgcgcagGTTATCTGAATGATCCAGAGGCGACAAAGAACACCATTGATAAGGACGGAT
EST: gi|211365916|gb|FL274314.1|FL274314
EST:     ACGGAACCAGCCAGGCGAGATATGCATCCGCGGCGAACAAATCATGAAAG                         GTTATCTGAATGATCCAGAGGCGACAAAGAACACCATTGATAAGGACGGAT
genomic: ACGGAACCAGCCAGGCGAGATATGCATCCGCGGCGAACAAATCATGAAAGgtaccgtcca ... tgatgcgcagGTTATCTGAATGATCCAGAGGCGACAAAGAACACCATTGATAAGGACGGAT
EST: gi|67019027|gb|CO447776.1|CO447776
EST:     ACGGAACCAGCCAGGCGAGATATGCATCCGCGGCGAACAAATCATGAAAG                         GTTATCTGAATGATCCAGAGGCGACAAAGAACACCATTGATAAGGACGGAT
genomic: ACGGAACCAGCCAGGCGAGATATGCATCCGCGGCGAACAAATCATGAAAGgtaccgtcca ... tgatgcgcagGTTATCTGAATGATCCAGAGGCGACAAAGAACACCATTGATAAGGACGGAT
EST: gi|148978851|gb|EE026338.2|EE026338
EST:     ACGGAACCAGCCAGGCGAGATATGCATCCGCGGCGAACAAATCATGAAAG                         GTTATCTGAATGATCCAGAGGCGACAAAGAACACCATTGATAAGGACGGAT
genomic: ACGGAACCAGCCAGGCGAGATATGCATCCGCGGCGAACAAATCATGAAAGgtaccgtcca ... tgatgcgcagGTTATCTGAATGATCCAGAGGCGACAAAGAACACCATTGATAAGGACGGAT
EST: gi|76924616|gb|DV170051.1|DV170051
EST:     ACGGAACCAGCCAGGCGAGATATGCATCCGCGGCGAACAAATCATGAAAG                         GTTATCTGAATGATCCAGAGGCGACAAAGAACACCATTGATAAGGACGGAT
genomic: ACGGAACCAGCCAGGCGAGATATGCATCCGCGGCGAACAAATCATGAAAGgtaccgtcca ... tgatgcgcagGTTATCTGAATGATCCAGAGGCGACAAAGAACACCATTGATAAGGACGGAT
EST: gi|211082094|gb|FL165108.1|FL165108
EST:     ACGGAACCAGCCAGGCGAGATATGCATCCGCGGCGAACAAATCATGAAAG                         GTTATCTGAATGATCCAGAGGCGACAAAGAACACCATTGATAAGGACGGAT
genomic: ACGGAACCAGCCAGGCGAGATATGCATCCGCGGCGAACAAATCATGAAAGgtaccgtcca ... tgatgcgcagGTTATCTGAATGATCCAGAGGCGACAAAGAACACCATTGATAAGGACGGAT
EST: gi|211365918|gb|FL274316.1|FL274316
EST:     ACGGAACCAGCCAGGCGAGATATGCATCCGCGGCGAACAAATCATGAAAG                         GTTATCTGAATGATCCAGAGGCGACAAAGAACACCATTGATAAGGACGGAT
genomic: ACGGAACCAGCCAGGCGAGATATGCATCCGCGGCGAACAAATCATGAAAGgtaccgtcca ... tgatgcgcagGTTATCTGAATGATCCAGAGGCGACAAAGAACACCATTGATAAGGACGGAT
EST: gi|149000216|gb|EE037361.2|EE037361
EST:     GGAACCAGCCAGGGGAGATATGCATCCGCGGCGAACAAATCATGAAAG                         GTTATCTGAATGATCCAGAGGCGACAAAGAACACCATTGATAAGGACGGAT
genomic: GGAACCAGCCAGGCGAGATATGCATCCGCGGCGAACAAATCATGAAAGgtaccgtcca ... tgatgcgcagGTTATCTGAATGATCCAGAGGCGACAAAGAACACCATTGATAAGGACGGAT