1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GGGGTCAGATGGAATGGGATTTGGCCCATTAATGTTGACTGAGGGTGAGAGATCCTTAGTTGAGCGCGTCCGGCAGGAGCTAAAGCATGAGCTTAAGCAGgtaatgttgaaacatttttttgtttttggcagtaatacactattgtctaagcaaaaactttcaactttcag
species | Zea mays |
transcript | GRMZM2G055243_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GATCCTTAGTTGAGCGTGTCCGGCAGGAGCTAAAGCATGAGCTTAAGCAG GGGTACAGAGACAAACTTGTGGATATTCGGGAAGAGATATTGCGGAAGCGAEST: gi|78181001|gb|DV551374.1|DV551374
genomic: GATCCTTAGTTGAGCGCGTCCGGCAGGAGCTAAAGCATGAGCTTAAGCAGgtaatgttga ... caactttcagGGGTACAGAGACAAACTTGTGGATATTCGGGAAGAGATATTGCGGAAGCGA
EST: GATCCTTAGTTGAGCGCGTCCGGCAGGAGCTAAAGCATGAGCTTAAGCAG GGGTACAGAGACAAACTTGTGGATATTCGGGAAGAGATATTGCGGAAGCGAEST: gi|149109130|gb|EE293152.2|EE293152
genomic: GATCCTTAGTTGAGCGCGTCCGGCAGGAGCTAAAGCATGAGCTTAAGCAGgtaatgttga ... caactttcagGGGTACAGAGACAAACTTGTGGATATTCGGGAAGAGATATTGCGGAAGCGA
EST: GATCCTTAGTTGAGCGCGTCCGGCAGGAGCTAAAGCATGAGCTTAAGCAG GGGTACAGAGACAAACTTGTGGATATTCGGGAAGAGATATTGCGGAAGCGAEST: gi|78180766|gb|DV551139.1|DV551139
genomic: GATCCTTAGTTGAGCGCGTCCGGCAGGAGCTAAAGCATGAGCTTAAGCAGgtaatgttga ... caactttcagGGGTACAGAGACAAACTTGTGGATATTCGGGAAGAGATATTGCGGAAGCGA
EST: GATCCTTAGTTGAGCGCGTCCGGCAGGAGCTAAAGCATGAGCTTAAGCAG GGGTACAGAGACAAACTTGTGGATATTCGGGAAGAGATATTGCGGAAGCGA
genomic: GATCCTTAGTTGAGCGCGTCCGGCAGGAGCTAAAGCATGAGCTTAAGCAGgtaatgttga ... caactttcagGGGTACAGAGACAAACTTGTGGATATTCGGGAAGAGATATTGCGGAAGCGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGGTCAGATGGAATGGGATTTGGCCCATTAATGTTGACTGAGGGTGAGAGATCCTTAGTTGAGCGCGTCCGGCAGGAGCTAAAGCATGAGCTTAAGCAGgtaatgttgaaacatttttttgtttttggcagtaatacactattgtctaagcaaaaactttcaactttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT