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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATATATTGTCTTAAATAGGCCTTGGGCTTTTGTCCAGTGGATCCAGAAAGCAAAGATCGTAGAAGAgtaagtatatttcctttttttttgtcattatggttgaaggatttgtatgttctcataatggaaatgtttgcag

Basic information

species Zea mays
transcript GRMZM2G055020_T03
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71443354|gb|DR824404.1|DR824404
EST:     AGGCCTTGGGCTTTTGTCCAGTGGATCCAGAAAGCAAAGATCGTAGAAGA                         GTATATATTAATGGCAGAGCCAGATCATGTCTTTGTGAAGCCTTTGCCAAA
genomic: AGGCCTTGGGCTTTTGTCCAGTGGATCCAGAAAGCAAAGATCGTAGAAGAgtaagtatat ... atgtttgcagGTATATATTAATGGCAGAGCCAGATCATGTCTTTGTGAAGCCTTTGCCAAA
EST: gi|71761576|gb|DR959513.1|DR959513
EST:     CCAGTGGATCCAGAAAGCAAAGATCGTAGAAGA                         GTATATATTAATGGCAGAGCCAGATCATGTCTTTGTGAAGCCTTTGCCAAA
genomic: CCAGTGGATCCAGAAAGCAAAGATCGTAGAAGAgtaagtatat ... atgtttgcagGTATATATTAATGGCAGAGCCAGATCATGTCTTTGTGAAGCCTTTGCCAAA
EST: gi|32840194|gb|CD979875.1|CD979875
EST:     AGGCCTTGGGCTTTTGTCCAGTGGATCCAGAAAGCAAAGATCGTAGAAGA                         GTATATATTAAT-GCAGAGCCAGATCATGTCTTTGTGAAGCCTTTGCCAAA
genomic: AGGCCTTGGGCTTTTGTCCAGTGGATCCAGAAAGCAAAGATCGTAGAAGAgtaagtatat ... atgtttgcagGTATATATTAATGGCAGAGCCAGATCATGTCTTTGTGAAGCCTTTGCCAAA
EST: gi|74237664|gb|DT645578.1|DT645578
EST:     CAGAAAGCAAAGATCGTAGAAGA                         GTATATATTAATGGCAGAGCCAGATCATGTCTTTGTGAAGCCTTTGCCAAA
genomic: CAGAAAGCAAAGATCGTAGAAGAgtaagtatat ... atgtttgcagGTATATATTAATGGCAGAGCCAGATCATGTCTTTGTGAAGCCTTTGCCAAA
EST: gi|149075926|gb|EE164487.2|EE164487
EST:     AGGCCTTGGGCTTTTGTCCAGTGGATCCAGAAAGCAAAGATCGTAGAAGA                         GTATATATTAATGGCAGAGCCAGATCATGTCTTTGTGAAGCCTTTGCCAAA
genomic: AGGCCTTGGGCTTTTGTCCAGTGGATCCAGAAAGCAAAGATCGTAGAAGAgtaagtatat ... atgtttgcagGTATATATTAATGGCAGAGCCAGATCATGTCTTTGTGAAGCCTTTGCCAAA
EST: gi|32840195|gb|CD979876.1|CD979876
EST:     AAAGCAAAGATCGTAGAAGA                         GTATATATTAATGGCAGAGCCAGATCATGTCTTTGTGAAGCCTTTGCCAAA
genomic: AAAGCAAAGATCGTAGAAGAgtaagtatat ... atgtttgcagGTATATATTAATGGCAGAGCCAGATCATGTCTTTGTGAAGCCTTTGCCAAA
EST: gi|149094970|gb|EE180558.2|EE180558
EST:     AGGCCTTGGGCTTTTGTCCAGTGGATCCAGAAAGCAAAGATCGTAGAAGA                         GTATATATTAATGGCAGAGCCAGATCATGTCTTTGTGAAGCCTTTGCCAAA
genomic: AGGCCTTGGGCTTTTGTCCAGTGGATCCAGAAAGCAAAGATCGTAGAAGAgtaagtatat ... atgtttgcagGTATATATTAATGGCAGAGCCAGATCATGTCTTTGTGAAGCCTTTGCCAAA
EST: gi|76015780|gb|DT942950.1|DT942950
EST:     AGGCCTTGGGCTTTTGTCCAGTGGATCCAGAAAGCAAAGATCGTAGAAGA                         GTATATATTAATGGCAGAGCCAGATCATGTCTTTGTGAAGCCTTTGCCAAA
genomic: AGGCCTTGGGCTTTTGTCCAGTGGATCCAGAAAGCAAAGATCGTAGAAGAgtaagtatat ... atgtttgcagGTATATATTAATGGCAGAGCCAGATCATGTCTTTGTGAAGCCTTTGCCAAA
EST: gi|71446890|gb|DR827940.1|DR827940
EST:     AGGCCTTGGGCTTTTGTCCAGTGGATCCAGAAAGCAAAGATCGTAGAAGA                         GTATATATTAATGGCAGAGCCAGATCATGTCTTTGTGAAGCCTTTGC-AAA
genomic: AGGCCTTGGGCTTTTGTCCAGTGGATCCAGAAAGCAAAGATCGTAGAAGAgtaagtatat ... atgtttgcagGTATATATTAATGGCAGAGCCAGATCATGTCTTTGTGAAGCCTTTGCCAAA
EST: gi|78120684|gb|DV539068.1|DV539068
EST:     AGGCCTTGGGCTTTTGTCCAGTGGATCCAGAAAGCCAAGATCGTAGAAGA                         GTATATATTAAT
genomic: AGGCCTTGGGCTTTTGTCCAGTGGATCCAGAAAGCAAAGATCGTAGAAGAgtaagtatat ... atgtttgcagGTATATATTAAT
EST: gi|71440531|gb|DR821581.1|DR821581
EST:     AGGCCTTGGGCTTTTGTCCAGTGGATCCAGAAAGCAAAGATCGTAGAAGA                         GTATATATTAATGGCAGAGCCAGATCATGTCTTTGTGAAGCCTTTGCCAAA
genomic: AGGCCTTGGGCTTTTGTCCAGTGGATCCAGAAAGCAAAGATCGTAGAAGAgtaagtatat ... atgtttgcagGTATATATTAATGGCAGAGCCAGATCATGTCTTTGTGAAGCCTTTGCCAAA
EST: gi|149077163|gb|EE165824.2|EE165824
EST:     AGGCCTTGGGCTTTTGTCCAGTGGATCCAGAAAGCAAAGATCGTAGAAGA                         GTATATATTAATGGCAGAGCCAGATCATGTCTTTGTGAAGCCTTTGCCAAA
genomic: AGGCCTTGGGCTTTTGTCCAGTGGATCCAGAAAGCAAAGATCGTAGAAGAgtaagtatat ... atgtttgcagGTATATATTAATGGCAGAGCCAGATCATGTCTTTGTGAAGCCTTTGCCAAA
EST: gi|71769809|gb|DR967746.1|DR967746
EST:     AGGCCTTGGGCTTTTGTCCAGTGGATCCAGAAAGCAAAGATCGTAGAAGA                         GTATATATTAATGGCAGAGCCAGATCATGTCTTTGTGAAGCCTTTGCCAAA
genomic: AGGCCTTGGGCTTTTGTCCAGTGGATCCAGAAAGCAAAGATCGTAGAAGAgtaagtatat ... atgtttgcagGTATATATTAATGGCAGAGCCAGATCATGTCTTTGTGAAGCCTTTGCCAAA
EST: gi|71763634|gb|DR961571.1|DR961571
EST:     AGGCCTTGGGCTTTTGTCCAGTGGATCCAGAAAGCAAAGATCGTAGAAGA                         GTATATATTAATGGCAGAGCCAGATCATGTCTTTGTGAAGCCTTTGCCAAA
genomic: AGGCCTTGGGCTTTTGTCCAGTGGATCCAGAAAGCAAAGATCGTAGAAGAgtaagtatat ... atgtttgcagGTATATATTAATGGCAGAGCCAGATCATGTCTTTGTGAAGCCTTTGCCAAA
EST: gi|71428101|gb|DR809151.1|DR809151
EST:     AGGCCTTGGGCTTTTGTCCAGTGGATCCAGAAAGCAAAGATCGTAGAAGA                         GTATATATTAATGGCAGAGCCAGATCATGTCTTTGTGAAGCCTTTGCCAAA
genomic: AGGCCTTGGGCTTTTGTCCAGTGGATCCAGAAAGCAAAGATCGTAGAAGAgtaagtatat ... atgtttgcagGTATATATTAATGGCAGAGCCAGATCATGTCTTTGTGAAGCCTTTGCCAAA
EST: gi|71449379|gb|DR830429.1|DR830429
EST:     AGGCCTTGGGCTTTTGTCCAGTGGATCCAGAAAGCAAAGATCGTAGAAGA                         GTATATATTAATGGCAGAGTTAGATCATGTCTTTGTGAAGCCTTTGCCAAA
genomic: AGGCCTTGGGCTTTTGTCCAGTGGATCCAGAAAGCAAAGATCGTAGAAGAgtaagtatat ... atgtttgcagGTATATATTAATGGCAGAGCCAGATCATGTCTTTGTGAAGCCTTTGCCAAA
EST: gi|211218550|gb|FL110185.1|FL110185
EST:     AGGCCTTGGGCTTTTGTCCAGTGGATCCAGAAAGCAAAGATCGTAGAAGA                         GTATATATTAATGGCAGAGCCAGATCATGTCTTTGTGAAGCCTTTGCCAAA
genomic: AGGCCTTGGGCTTTTGTCCAGTGGATCCAGAAAGCAAAGATCGTAGAAGAgtaagtatat ... atgtttgcagGTATATATTAATGGCAGAGCCAGATCATGTCTTTGTGAAGCCTTTGCCAAA
EST: gi|71439617|gb|DR820667.1|DR820667
EST:     AGGCCTTGGGCTTTTGTCCAGTGGATCCAGAAAGCAAAGATCGTAGAAGA                         GTATATATTAATGGCAGAGCCAGATCATGTCTTTGTGAAGCCTTTGCCAAA
genomic: AGGCCTTGGGCTTTTGTCCAGTGGATCCAGAAAGCAAAGATCGTAGAAGAgtaagtatat ... atgtttgcagGTATATATTAATGGCAGAGCCAGATCATGTCTTTGTGAAGCCTTTGCCAAA
EST: gi|76015781|gb|DT942951.1|DT942951
EST:     AGGCCTTGGGCTTTTGTCCAGTGGATCCAGAAAGCAAAGATCGTAGAAGA                         GTATATATTAATGGCAGAGCCAGATCATGTCTTTG
genomic: AGGCCTTGGGCTTTTGTCCAGTGGATCCAGAAAGCAAAGATCGTAGAAGAgtaagtatat ... atgtttgcagGTATATATTAATGGCAGAGCCAGATCATGTCTTTG
EST: gi|91048418|gb|EB158836.1|EB158836
EST:     AGGCCTTGGGCTTTTGTCCAGTGGATCCAGAAAGCAAAGATCGTAGAAGA                         GTATATATTAATGGCAGAGCCAGATCATGTCTTTGTGAAGCCTTTGCCAAA
genomic: AGGCCTTGGGCTTTTGTCCAGTGGATCCAGAAAGCAAAGATCGTAGAAGAgtaagtatat ... atgtttgcagGTATATATTAATGGCAGAGCCAGATCATGTCTTTGTGAAGCCTTTGCCAAA
EST: gi|149103179|gb|EE288550.2|EE288550
EST:     AGGCCTTGGGCTTTTGTCCAGTGGATCCAGAAAGCAAAGATCGTAGAAGA                         GTATATATTAATGGCAGAGCCAGATCATGTCTTTGTGAAGCCTTTGCCAAA
genomic: AGGCCTTGGGCTTTTGTCCAGTGGATCCAGAAAGCAAAGATCGTAGAAGAgtaagtatat ... atgtttgcagGTATATATTAATGGCAGAGCCAGATCATGTCTTTGTGAAGCCTTTGCCAAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGATATATTGTCTTAAATAGGCCTTGGGCTTTTGTCCAGTGGATCCAGAAAGCAAAGATCGTAGAAGAgtaagtatatttcctttttttttgtcattatggttgaaggatttgtatgttctcataatggaaatgtttgcag

- - - - - - - - - - - - - - - - - -  AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - -  AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - -  GCAAAG