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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCAGGAGTAAGATGGGATGATGTTGCCGGACTTAGTGAGGCCAAACGACTCCTCGAGGAAGCAGTTGTGCTTCCTCTCTGGATGCCTGAATATTTTCAGgtactagtctatattctgctatgctgtcccttactggttcaaacttagcgctgtaaagtatctgaaagatgtttatttattgttggcactaacaaatttt...

Basic information

species Zea mays
transcript GRMZM2G054715_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G054715_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g49000.1 (Oryza sativa), 5'ss of exon 3
TCCAGGAGTAAGATGGGATGATGTTGCCGGACTTAGTGAGGCCAAACGACTCCTCGAGGAAGCAGTTGTGCTTCCTCTCTGGATGCCTGAATATTTTCAGgtactagtctatattctgctatgctgtcccttactggttcaaacttagcgctgtaaagtatctgaaagatgtttatttattgttggcactaacaaatttt------
 ||||| || |||||||||||||| || || ||||||||||||||| |||| || || ||||||||||| |||||||||||||||||||||||||| |||||| |  | | || | |||||| || ||   | |||    || |||   ||   ||  ||| |   |          | || | | ||   |||   | |      
CCCAGGTGTTAGATGGGATGATGTCGCAGGTCTTAGTGAGGCCAAAAGACTTCTTGAAGAAGCAGTTGTACTTCCTCTCTGGATGCCTGAATATTTCCAGgtaatgatttttactgtgctattctatcagattctg---taacctt---gcctgaatttatttttgatgctagccaatgttatggccatgcacatgatctggcatg

upper sequence: GRMZM2G054715_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA08G22210.1 (Glycine max), 5'ss of exon 3
TCCAGGAGTAAGATGGGATGATGTTGCCGGACTTAGTGAGGCCAAACGACTCCTCGAGGAAGCAGTTGTGCTTCCTCTCTGGATGCCTGAATATTTTCAGgtactagtctatattctgctatgctgtcccttactggttcaaacttagcgctgtaaagtatctgaaagatgtttatttattgttggcactaa-caaatttt------
||| ||||| ||||||||||||||||| || |||| ||| || ||| | || || || ||||| ||||| |||||  | ||||||||||||||||| |||||  ||   |  | |    |||  |   |   | |   | |||  ||||  |    | | | |  ||     |||| |||  ||   | ||| ||   |||      
TCCTGGAGTCAGATGGGATGATGTTGCAGGGCTTACTGAAGCAAAAAGGCTTCTAGAAGAAGCTGTTGTTCTTCCCTTGTGGATGCCTGAATATTTCCAGgt--tatcttgaact----tatttttctctgaattctcttaaaactagc-ttacctaatgttttcaatccagttatatatctttaataataatcatggtttatttta

upper sequence: GRMZM2G054715_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA07G03820.1 (Glycine max), 5'ss of exon 3
TCCAGGAGTAAGATGGGATGATGTTGCCGGACTTAGTGAGGCCAAACGACTCCTCGAGGAAGCAGTTGTGCTTCCTCTCTGGATGCCTGAATATTTTCAGgtactagtctatattctgctatgctgtcccttactggt-tcaaacttagcgctgtaaagtatctgaaagatgtttatttattgttggcactaacaaatttt--------
||| ||||| ||||||||||||||||| || |||| ||| || ||| | || || || ||||| || || |||||| | ||||||||||||||||| ||||||       || ||   |||   | || || | |  | | |||  ||||  |    | | | || ||     |||| | ||  |     |   | |||||        
TCCTGGAGTTAGATGGGATGATGTTGCAGGGCTTACTGAAGCAAAAAGGCTTCTAGAAGAAGCTGTCGTTCTTCCTTTGTGGATGCCTGAATATTTCCAGgta-------atcttgaactaatttttctctgaattctcttaaaactagc-ttacctaatgtttgcaatccagttatat-ttaataatcatggtatattttataactaa

upper sequence: GRMZM2G054715_T01 (Zea mays), 5'ss of exon 3
lower sequence: AT1G80350.1 (Arabidopsis thaliana), 5'ss of exon 3
TCCAGGAGTAAGATGGGATGATGTTGCCGGACTTAGTGAGGCCAAACGACTCCTCGAGGAAGCAGTTGTGCTTCCTCTCTGGATGCCTGAATATTTTCAGgtacta-gtctatattctgctatgctgtcccttactggttcaaacttagcgctgtaaagtatctgaaag--atgtttatttattgttggcactaacaaatttt-------------------------------------------------------------------
||| || ||  | |||||||||||||| ||  |   ||| |||||| | || || ||||| |||||||| |||||| | |||||||| ||||| |||||||||||  |  | |  ||   || |||||    |   | ||| |  |||    | | |   ||     |   ||    | | |  |||   | | |  | ||                                                                     
TCCTGGTGTCCGTTGGGATGATGTTGCAGGTTTGTCTGAAGCCAAAAGGCTGCTTGAGGAGGCAGTTGTCCTTCCTTTATGGATGCCCGAATACTTTCAGgtactttgattctgctcca-tacgctgtgaaatttggattctatattactattattagacatggagcaatcatacagaataacagtttcaattcatcatttccgtagactttatatttgatcttccaggtatagaggatacttaatttgattgtttttgtttcccttcag

upper sequence: GRMZM2G054715_T01 (Zea mays), 5'ss of exon 3
lower sequence: Vv09s0002g05260.t01 (Vitis vinifera), 5'ss of exon 3
TCCAGGAGTAAGATGGGATGATGTTGCCGGACTTAGTGAGGCCAAACGACTCCTCGAGGAAGCAGTTGTGCTTCCTCTCTGGATGCCTGAATATTTTCAGgtac--tagtctatattctgctatgctgtccctt---actggttcaaacttagcgctgtaaagtatctg-aaagatgtttatttattgttggcactaacaaatttt
 || ||||| ||||||||||||||||| ||| | ||||| |||||| ||||||| |||||||| ||||| |||||| | ||||||||||||||||| ||||||     | |||| ||   ||    | ||       |   |||  || | | |  |      ||     || ||| |     |||  |  |   |   ||     
CCCTGGAGTGAGATGGGATGATGTTGCAGGATTGAGTGAAGCCAAAAGACTCCTAGAGGAAGCTGTTGTCCTTCCTTTATGGATGCCTGAATATTTCCAGgtatgtctgcctatttttccctgaattatcatcaggaaaaagttggaattcatcttttggtgttagagacaaggatatcgggatatcttctgt--tgggaag----