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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCCTCGTCAACCTCATTGGCTGCTGCGCCGAGGGTGACGAGAGGCTGCTTGTCGCCGAGTACATGCCCAACGACACCCTGTCCAAGCATCTCTTCCACTgtacgtgctctccacctgctagggatactccagcatttttctgttatatacgggcctcgcgggctggagttgtgtcgtctacggctacggtgaccgtggg...

Basic information

species Zea mays
transcript GRMZM2G054634_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G054634_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os10g42110.1 (Oryza sativa), 5'ss of exon 3
CGCCTCGTCAACCTCATTGGCTGCTGCGCCGAGGGTGACGAGAGGCTGCTTGTCGCCGAGTACATGCCCAACGACACCCTGTCCAAGCATCTCTTCCACTgtacgtgctctccacctgctagggatactc-cagcatttttctgttatatacgggcctcgcgggctggagttgtgtcgtctacggctacggtgaccgtggg
||||||||||||||||| || |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||       |||    ||     |  ||    |    ||    |||  | |  |    |  |  | |  |   | |   |||     |||||   |   
CGCCTCGTCAACCTCATCGGATGCTGCGCCGAGGGCGACGAGAGGCTGCTCGTCGCCGAGTACATGCCCAACGACACCCTTTCCAAGCATCTCTTCCACTgtactctactaccataccctcttcctcttcatttcgccatttccgtatccatgtccactactaggagtaactacttgggtgacgtacttggtgatgatcc-

upper sequence: GRMZM2G054634_T02 (Zea mays), 5'ss of exon 3
lower sequence: EFJ23298 (Selaginella moellendorffii), 5'ss of exon 2
CGCCTCGTCAACCTCATTGGCTGCTGCGCCGAGGGTGACGAGAGGCTGCTTGTCGCCGAGTACATGCCCAACGACACCCTGTCCAAGCATCTCTTCCACTgtacgtgctctccacctgctagggatactccagcatttttctgttatatacgggcctcgcgggctggagttgtgtcgtctacggctacggtgaccgtggg
 |  | || ||| | ||||| ||||||  ||| ||||| |||||| |||| ||||||||||||||||| ||||||||  || | ||||| || |||||||||| |    |      |  |   ||   |  | |       |  |  || |    |   |   ||| ||                               
AGATTGGTTAACTTGATTGGATGCTGCTGCGAAGGTGATGAGAGGTTGCTAGTCGCCGAGTACATGCCGAACGACACATTGACAAAGCACCTTTTCCACTgtaagattgcgggtttttttcctgactttaaaacggcgaattcatgcattcatttccttctctctgcag-------------------------------

upper sequence: GRMZM2G054634_T02 (Zea mays), 5'ss of exon 3
lower sequence: EFJ20301 (Selaginella moellendorffii), 5'ss of exon 2
CGCCTCGTCAACCTCATTGGCTGCTGCGCCGAGGGTGACGAGAGGCTGCTTGTCGCCGAGTACATGCCCAACGACACCCTGTCCAAGCATCTCTTCCACTgtacgtgctctccacctgctagggatactccagcatttttctgttatatacgggcctcgcgggctggagttgtgtcgtctacggctacggtgaccgtggg
 |  | || ||| | ||||| ||||||  ||| ||||| |||||| |||| ||||||||||||||||| ||||||||  || | ||||| || |||||||||| |              |  || |  |        |  || | | |    |   ||  |   |    |  |    ||| | |                
AGATTGGTTAACTTGATTGGATGCTGCTGCGAAGGTGATGAGAGGTTGCTAGTCGCCGAGTACATGCCGAACGACACATTGACAAAGCACCTTTTCCACTgtaag------------attgcgggtggtttttttcctgactttaaaacggcgaattcatgcattcatttccttctctctgcag----------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89248037|gb|DY619823.1|DY619823
EST:     TGTCGCCGAGTACATGCCCAACGACACCCTGTCCAAGCATCTCTTCCACT                         GGGATAAGCAGCCGTTACCATGGGAAATGAGGCTGAGGGTTGCATATTTCA
genomic: TGTCGCCGAGTACATGCCCAACGACACCCTGTCCAAGCATCTCTTCCACTgtacgtgctc ... cttttttcagGGGATAAGCAGCCGTTACCATGGGAAATGAGGCTGAGGGTTGCATATTTCA
EST: gi|71760095|gb|DR958032.1|DR958032
EST:     TGTCGCCGAGTACATGCCCAACGACACCCTGTCCAAGCATCTCTTCCACT                         GGGATAAGCAGCCGTTACCATGGGAAATGAGGCTGAGGGTTGCATATTTCA
genomic: TGTCGCCGAGTACATGCCCAACGACACCCTGTCCAAGCATCTCTTCCACTgtacgtgctc ... cttttttcagGGGATAAGCAGCCGTTACCATGGGAAATGAGGCTGAGGGTTGCATATTTCA
EST: gi|71330262|gb|DR801882.1|DR801882
EST:     TGTCGCCGAGTACATGCCCAACGACACCCTGTCCAAGCATCTCTTCCACT                         GGGATAAGCAGCCGTTACCATGGGAAATGAGGCTGAGGGTTGCATATTTCA
genomic: TGTCGCCGAGTACATGCCCAACGACACCCTGTCCAAGCATCTCTTCCACTgtacgtgctc ... cttttttcagGGGATAAGCAGCCGTTACCATGGGAAATGAGGCTGAGGGTTGCATATTTCA
EST: gi|78122641|gb|DV541025.1|DV541025
EST:     TGTCGCCGAGTACATGCCCAACGACACCCTGTCCAAGCATCTCTTCCACT                         GGGATAAGCAGCCGTTACCATGGGAAATGAGGCTGAGGGTTGCATATTTCA
genomic: TGTCGCCGAGTACATGCCCAACGACACCCTGTCCAAGCATCTCTTCCACTgtacgtgctc ... cttttttcagGGGATAAGCAGCCGTTACCATGGGAAATGAGGCTGAGGGTTGCATATTTCA
EST: gi|71426768|gb|DR807818.1|DR807818
EST:     TGTCGCCGAGTACATGCCCAACGACACCCTGTCCAAGCATCTCTTCCACT                         GGGATAAGCAGCCGTTACCATGGGAAATGAGGCTGAGGGTTGCATATTTCA
genomic: TGTCGCCGAGTACATGCCCAACGACACCCTGTCCAAGCATCTCTTCCACTgtacgtgctc ... cttttttcagGGGATAAGCAGCCGTTACCATGGGAAATGAGGCTGAGGGTTGCATATTTCA