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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCCCACGGGGCCGCCAGAGTGGAAGGAGGTGTTCGACGACCCCTTGCTTCCCCTCATGGTCGACATCGGCTGCGgtgcgcaaatgatacttttatttaattttattttatactggcaatgggttgcttgaaggaggatgttctcag

Basic information

species Zea mays
transcript GRMZM2G054378_T08
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G054378_T08 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g35170.1 (Oryza sativa), 5'ss of exon 3
GAGCCCACGGGGCCGCCAGAGTGGAAGGAGGTGTTCGACGACCCCTTGCTTCCCCTCATGGTCGACATCGGCTGCGgtgcg---------------caaatgatacttttatttaattttattttatactggcaatgggttgcttgaaggaggatgttctcag---------------------------
|||||||||| ||| || |||||||||||||||||||| || ||| |||| || |||||||||||||| ||||||||||||               | |||  |  |||  |||  |||| |||| ||||       | |    || |    |||  | ||||                           
GAGCCCACGGAGCCACCGGAGTGGAAGGAGGTGTTCGAGGATCCCCTGCTGCCACTCATGGTCGACATTGGCTGCGgtgcgttccttccttcttccccaattcttttttcttttcttttttttttttactttgctgtgctcatgtgtactcagattgtatcagctttatctatgaaacgttgctatgtag

upper sequence: GRMZM2G054378_T08 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g35170.2 (Oryza sativa), 5'ss of exon 3
GAGCCCACGGGGCCGCCAGAGTGGAAGGAGGTGTTCGACGACCCCTTGCTTCCCCTCATGGTCGACATCGGCTGCGgtgcg---------------caaatgatacttttatttaattttattttatactggcaatgggttgcttgaaggaggatgttctcag---------------------------
   ||||||| ||| || |||||||||||||||||||| || ||| |||| || |||||||||||||| ||||||||||||               | |||  |  |||  |||  |||| |||| ||||       | |    || |    |||  | ||||                           
---CCCACGGAGCCACCGGAGTGGAAGGAGGTGTTCGAGGATCCCCTGCTGCCACTCATGGTCGACATTGGCTGCGgtgcgttccttccttcttccccaattcttttttcttttcttttttttttttactttgctgtgctcatgtgtactcagattgtatcagctttatctatgaaacgttgctatgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149043291|gb|EE047354.2|EE047354
EST:     GGAGGTGTTCGACGACCCCTTGCTTCCCCTCATGGTCGACATCGGCTGCG                         GGAATCTTGATGTCCAGGGAGTGGGAGGTTCTTGATTTGGCACGCGAAGAA
genomic: GGAGGTGTTCGACGACCCCTTGCTTCCCCTCATGGTCGACATCGGCTGCGgtgcgcaaat ... atgttctcagGGAATCTTGATGTCCAGGGAGTGGGAGGTTCTTGATTTGGCACGCGAAGAA