1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GAGATTAGAACGGTGGAGCTTGCAAAGCCAGTTGGATGGGTCCACATATCATTATCCGGGATTGATCCACGgtatgcattgtaatatgaagatgaataaccgttcctaaaattatgtgtatactccctttatacatgtaggaggacaaaacaaatgtgcagagcttagcta...
species | Zea mays |
transcript | GRMZM2G054247_T02 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GGGTCCACATATCATTATCCGGGATTGATCCACG AGAAACATTCATTCACACATTTATGCTCCAAATTGCTGTTTTATCCAATCAEST: gi|32857021|gb|CD996702.1|CD996702
genomic: GGGTCCACATATCATTATCCGGGATTGATCCACGgtatgcattg ... atgtatgcagAGAAACATTCATTCACACATTTATGCTCCAAATTGCTGTTTTATCCAATCA
EST: GGTCCACATATCATTATCCGGGATTGATCCACG AGAAACATTCATTCACACATTTATGCTCCAAATTGCTGTTTTATCCAATCAEST: gi|8273087|gb|BE012181.1|BE012181
genomic: GGTCCACATATCATTATCCGGGATTGATCCACGgtatgcattg ... atgtatgcagAGAAACATTCATTCACACATTTATGCTCCAAATTGCTGTTTTATCCAATCA
EST: GCAAAGCCAGTTGGATGGGTCCACATATCATTATCCGGGATTGATCCACG AGAAACATTCATTCACACATTTATGCTCCAAATTGCTGTTTTATCCAATCAEST: gi|148954203|gb|EC899610.2|EC899610
genomic: GCAAAGCCAGTTGGATGGGTCCACATATCATTATCCGGGATTGATCCACGgtatgcattg ... atgtatgcagAGAAACATTCATTCACACATTTATGCTCCAAATTGCTGTTTTATCCAATCA
EST: GCAAAGCCAGTTGGATGGGTCCACATATCATTATCCGGGATTGATCCACG AGAAACATTCATTCACACATTTATGCTCCAAATTGCTGTTTTATCCAATCAEST: gi|16379595|gb|BI993037.1|BI993037
genomic: GCAAAGCCAGTTGGATGGGTCCACATATCATTATCCGGGATTGATCCACGgtatgcattg ... atgtatgcagAGAAACATTCATTCACACATTTATGCTCCAAATTGCTGTTTTATCCAATCA
EST: GCAAAGCCAGTTGGATGGGTCCACATATCATTATCCGGGATTGATCCACG AGAAACATTCATTCACACATTTATGCTCCAAATATGCTGTTTTATCCAATCEST: gi|91873253|gb|EB403210.1|EB403210
genomic: GCAAAGCCAGTTGGATGGGTCCACATATCATTATCCGGGATTGATCCACGgtatgcattg ... atgtatgcagAGAAACATTCATTCACACATTTATGCTCCAAAT-TGCTGTTTTATCCAATC
EST: GCAAAGCCAGTTGGATGGGTCCACATATCATTATCCGGGATGGATCCACG AGAAACATTCATTCACACATTTATGCTCCAAATTGCTGTTTTATCCAATCAEST: gi|87153735|gb|DY398524.1|DY398524
genomic: GCAAAGCCAGTTGGATGGGTCCACATATCATTATCCGGGATTGATCCACGgtatgcattg ... atgtatgcagAGAAACATTCATTCACACATTTATGCTCCAAATTGCTGTTTTATCCAATCA
EST: GCAAAGCCAGTTGGATGGGTCCACATATCATTATCCGGGATTGATCCGCG AGAAACATTCATTCACACATTTATGCTCCAAATTGCTGTTTTATCCAATCAEST: gi|22490544|gb|BU050467.1|BU050467
genomic: GCAAAGCCAGTTGGATGGGTCCACATATCATTATCCGGGATTGATCCACGgtatgcattg ... atgtatgcagAGAAACATTCATTCACACATTTATGCTCCAAATTGCTGTTTTATCCAATCA
EST: GCAAAGCCAGTTGGATGGGTCCACATATCATTATCCGGGATTGATCCGCG AGAAACATTCATTCACACATTTATGCTCCAAATTGCTGTTTTATCCAATCAEST: gi|71427965|gb|DR809015.1|DR809015
genomic: GCAAAGCCAGTTGGATGGGTCCACATATCATTATCCGGGATTGATCCACGgtatgcattg ... atgtatgcagAGAAACATTCATTCACACATTTATGCTCCAAATTGCTGTTTTATCCAATCA
EST: GCAAAGCCAGTTGGATGGGTCCACATATCATTATCCGGGATTGATCCACG AGAAACATTCATTCACACATTTATGCTCCAAATTGCTGTTTTATCCAATCAEST: gi|94476642|gb|EB705600.1|EB705600
genomic: GCAAAGCCAGTTGGATGGGTCCACATATCATTATCCGGGATTGATCCACGgtatgcattg ... atgtatgcagAGAAACATTCATTCACACATTTATGCTCCAAATTGCTGTTTTATCCAATCA
EST: GCAAAGCCAGTTGGATGGGTCCACATATCATTATCCGGGATTGATCCACG AGAAACATTCATTCACACATTTATGTTCCAAATTGCTGTTTTATCCAATCA
genomic: GCAAAGCCAGTTGGATGGGTCCACATATCATTATCCGGGATTGATCCACGgtatgcattg ... atgtatgcagAGAAACATTCATTCACACATTTATGCTCCAAATTGCTGTTTTATCCAATCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGATTAGAACGGTGGAGCTTGCAAAGCCAGTTGGATGGGTCCACATATCATTATCCGGGATTGATCCACGgtatgcattgtaatatgaagatgaataaccgttcctaaaattatgtgtatactccctttatacatgtaggaggacaaaacaaatgtgcagagcttagcta
- - - - - - - - - - GCAAAG