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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCCGCCGGCCGAGCTCGAGGCTCTGCTCGTCGCCCACCCGTCCATCGCCGACGCGGCCGTCGTCCCgtaagaccaatatcctctgcttcggaaccgccaaacgccgcaacaaaactgctcgttctgagtgtgtgtgtgtgtatatgtatgcgcgtggcag

Basic information

species Zea mays
transcript GRMZM2G054013_T05
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G054013_T03 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os02g46970.1 (Oryza sativa), 5'ss of exon 4
GTGCCGCCGGCCGAGCTCGAGGCTCTGCTCGTCGCCCACCCGTCCATCGCCGACGCGGCCGTCGTCCCgtaagaccaatatcctctgcttcggaaccgccaaacgc-cgcaacaaaactgctcgttctgagtgtgtgtgtgtgtatatgtatgcgcgtggcag
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GTGCCGCCGGCCGAGCTGGAGTCGCTGCTCATCGCTCACCCGTCCATCGCTGACGCCGCCGTCGTCCCgtaagacctccattatttcaccatcaacagcgtaacacacaccaccagaatttactcgccgaggtaaaaaaaataactgcatgttaaaatgtcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71436394|gb|DR817444.1|DR817444
EST:     GAGGCTTTGCTTGTCGCCCACCCGTCCTTCGCCGACGCGGCCGTCGTCCC                         GCAAAAGGACGAAGCCGCCGGCGAGGTCCCCGTCGCCTTCGTGGTCCGCGC
genomic: GAGGCTCTGCTCGTCGCCCACCCGTCCATCGCCGACGCGGCCGTCGTCCCgtaagaccaa ... cgcgtggcagGCAAAAGGACGAAGCCGCCGGCGAGGTCCCCGTCGCCTTCGTGGTCCGCGC
EST: gi|50334551|gb|CO529677.1|CO529677
EST:     GAGGCTTTGCTCGTCGCCCACCCGTCCATCGCCGACGCGGCCGTCGTCCC                         GCAAAAGGACGAAGCCGCCGGCGAGGTCCCCGTCGCCTTCGTGGTCCGCGC
genomic: GAGGCTCTGCTCGTCGCCCACCCGTCCATCGCCGACGCGGCCGTCGTCCCgtaagaccaa ... cgcgtggcagGCAAAAGGACGAAGCCGCCGGCGAGGTCCCCGTCGCCTTCGTGGTCCGCGC
EST: gi|18179985|gb|BM381195.1|BM381195
EST:     AAGGCTCTGCTCGTCGCCCACCCGTCCATCGCCGACGCGGCCGTCGTCCC                         GCAAAAGGACGAAGCCGCCGGCGAGGTCCCCGTCGCATTCGTGGTCCGCGC
genomic: GAGGCTCTGCTCGTCGCCCACCCGTCCATCGCCGACGCGGCCGTCGTCCCgtaagaccaa ... cgcgtggcagGCAAAAGGACGAAGCCGCCGGCGAGGTCCCCGTCGCCTTCGTGGTCCGCGC
EST: gi|37421492|gb|CF648446.1|CF648446
EST:     GAGGCTCTGCTCGTCGCCCACCCGTCCATCGCCGACGCGGCCGTCGTCCC                         GCAAAAGGACGAAGCCGCCGGCGAGGTCCCCGTCGCCTTCGTGGTCCGCGC
genomic: GAGGCTCTGCTCGTCGCCCACCCGTCCATCGCCGACGCGGCCGTCGTCCCgtaagaccaa ... cgcgtggcagGCAAAAGGACGAAGCCGCCGGCGAGGTCCCCGTCGCCTTCGTGGTCCGCGC
EST: gi|149084174|gb|EE173585.2|EE173585
EST:     GAGGCTCTGCTCGTCGCCCACCCGTCCATCGCCGACGCGGCCGTCGTCCC                         GCAAAAGGACGAAGCCGCCGGCGAGGTCCCCGTCGCCTTCGTGGTCCGCGC
genomic: GAGGCTCTGCTCGTCGCCCACCCGTCCATCGCCGACGCGGCCGTCGTCCCgtaagaccaa ... cgcgtggcagGCAAAAGGACGAAGCCGCCGGCGAGGTCCCCGTCGCCTTCGTGGTCCGCGC
EST: gi|91048670|gb|EB159088.1|EB159088
EST:     GAGGCTCTGTTCGTCGCCCACCCGTCCATCGCCGACGCGGCCGTCGTCCC                         GCAAAAGGACGAAGCCGCCGGCGAGGTCCCCGTCGCCTTCGTGGTCCGCGC
genomic: GAGGCTCTGCTCGTCGCCCACCCGTCCATCGCCGACGCGGCCGTCGTCCCgtaagaccaa ... cgcgtggcagGCAAAAGGACGAAGCCGCCGGCGAGGTCCCCGTCGCCTTCGTGGTCCGCGC