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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGAAGATGACCCAAATTATGTTCGAGACATTCAATGCACCAGCAATGTATGTTGCTATCCAAGCTGTCCTTTCCCTGTATGCCAGCGGTCGCACTACAGgcacgtgtccactttcacctcttattaaagtttttctaggacaacgtctctgattctcgtcattggtgatctgacgacaccattctactacctatgtctcggtactctgtgtgcag

Basic information

species Zea mays
transcript GRMZM2G053299_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G053299_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os03g61970.1 (Oryza sativa), 5'ss of exon 3
GAGAAGATGACCCAAATTATGTTCGAGACATTCAATGCACCAGCAATGTATGTTGCTATCCAAGCTGTCCTTTCCCTGTATGCCAGCGGTCGCACTACAGgcacgtgtccactttcacctcttattaa--agtttttctaggacaacgtctctgattctcgtcattggtgatctgacgacaccattctactacctatgtctcggtactctgtgtgcag
||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| ||||| |||||||| ||||| || |||||||| ||||| || ||||||| ||||||| ||||  || ||   ||  ||| ||| ||     || |||||        ||||||||||| ||||  ||      |    | | ||                    
GAGAAAATGACCCAAATCATGTTTGAGACATTCAATGCACCAGCAATGTATGTGGCTATTCAAGCTGTTCTTTCACTATATGCCAGTGGTCGTACAACAGgcatgtgtccattttctactattcaaaatgagtctttgtacacttacatctct--------tcattggtgatatgaccccagtgcgttgtggcttgtgcag-----------------

upper sequence: GRMZM2G053299_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA06G15520.2 (Glycine max), 5'ss of exon 3
GAGAAGATGACCCAAATTATGTTCGAGACATTCAATGCACCAGCAATGTATGTTGCTATCCAAGCTGTCCTTTCCCTGTATGCCAGCGGTCGCACTACAGgcacgtgtccactttcacctcttattaaagtttttctaggacaacgtctctgattctcgtcattggtgatctgacgacaccattctactacctatgtctcggtactctgtgtgcag
|| || ||||||||||| ||||| ||||| |||||||  || || |||||||| || ||||| |||||||| ||||| ||||| || |||||||| || ||   ||    | || || || |  ||||     | ||  | |  |   |     | || |        ||||      | ||                                  
GAAAAAATGACCCAAATCATGTTTGAGACCTTCAATGTGCCTGCCATGTATGTGGCCATCCAGGCTGTCCTCTCCCTATATGCAAGTGGTCGCACAACTGgtttgtacttatttccatctgtc-ttaattcactcctttgtcttcacattgttctatccttgaatcaaatctttttgaatcag---------------------------------

upper sequence: GRMZM2G053299_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA08G19420.1 (Glycine max), 5'ss of exon 3
GAGAAGATGACCCAAATTATGTTCGAGACATTCAATGCACCAGCAATGTATGTTGCTATCCAAGCTGTCCTTTCCCTGTATGCCAGCGGTCGCACTACAGgcacgtgtccactttcacctcttattaaagtttttctaggacaacgtctctgattctcgtcattggtgatctgacgacaccattctactacctatgtctcggtactctgtgtgcag
||||||||||||||||||||||| ||||| |||||||  || || ||||||||||| || || |||||| | || ||||||||||| ||  | ||||||||      |    ||       | ||    | ||| | |     ||    |||    | |||||  ||||| |  | |    |||   | |  ||| |      |  |||| ||   
GAGAAGATGACCCAAATTATGTTTGAGACTTTCAATGTGCCTGCCATGTATGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGg------tttgtttctgtgattgatcttggatttaccaattttactatactg----tggtcat--gtgattt--caattggattgggccagttatttgaataaatgctgtatgt--

upper sequence: GRMZM2G053299_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA05G32220.1 (Glycine max), 5'ss of exon 2
GAGAAGATGACCCAAATTATGTTCGAGACATTCAATGCACCAGCAATGTATGTTGCTATCCAAGCTGTCCTTTCCCTGTATGCCAGCGGTCGCACTACAGgcacgtgt-ccactttcacctcttattaaagtttttctaggacaacgtctctgattctcgtcattggtgatctgacgacaccattctactacctatgtctcggtactctgtgtgcag
|| |||||||||||||| ||||| ||||| |||||||  || || |||||||| || ||||| ||||| || ||| |||||||||| |||||||| || ||   || |   ||  ||     | ||| |  || || ||  |  || ||  |  ||| |   ||   |   ||  | | ||                                    
GAAAAGATGACCCAAATCATGTTTGAGACCTTCAATGTGCCTGCCATGTATGTGGCCATCCAGGCTGTTCTCTCCTTGTATGCCAGTGGTCGCACAACTGgtttgtatattaccatctgtcttgattca--ttcttttataatcacatcattctttccctgaatcaatt-cctttcaaaacag----------------------------------

upper sequence: GRMZM2G053299_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA15G05570.1 (Glycine max), 5'ss of exon 3
GAGAAGATGACCCAAATTATGTTCGAGACATTCAATGCACCAGCAATGTATGTTGCTATCCAAGCTGTCCTTTCCCTGTATGCCAGCGGTCGCACTACAGgcacgtgtccact-ttcacctcttattaaagtttttctaggacaacgtctctgattctcgtcattggtgatctgacgacaccattctactacctatgtctcggtactctgtgtgcag
||||||||||||||||||||||| ||||| |||||||  || || ||||||||||| || || |||||| | || ||||||||||| || || ||||||||   || ||     || | ||   ||| |   ||| |||   |   | |      | ||   |||||  ||  |   |    ||| | ||    |  |  | |||            
GAGAAGATGACCCAAATTATGTTTGAGACTTTCAATGTGCCTGCCATGTATGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGACGTACTACAGgtttgtttctgtgattgatcttggatttactatttactataccgtggacatgtgatttca--attgg--attaggtcagcttattat-ctgagcaaattcctgta------------

upper sequence: GRMZM2G053299_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA08G15480.1 (Glycine max), 5'ss of exon 3
GAGAAGATGACCCAAATTATGTTCGAGACATTCAATGCACCAGCAATGTATGTTGCTATCCAAGCTGTCCTTTCCCTGTATGCCAGCGGTCGCACTACAGgcacgtgt-ccactttcacctcttattaaagtttttctaggacaacgtctctgattctcgtcattggtgatctgacgacaccattctactacctatgtctcggtactctgtgtgcag
|| |||||||||||||| ||||| ||||| |||||||  || || |||||||| || ||||| ||||| || ||| ||||||| || |||||||| || ||   || |  |||  ||     | ||| |  || || ||  |  || |   |  ||| |   ||   |   ||    | ||                                    
GAAAAGATGACCCAAATCATGTTTGAGACCTTCAATGTGCCTGCCATGTATGTGGCCATCCAGGCTGTTCTCTCCTTGTATGCAAGTGGTCGCACAACTGgtttgtatatcaccatctgtcttgattca--ttcttttataatcacattgttctttccctgaatcaatt-ccttttaaaacag----------------------------------

upper sequence: GRMZM2G053299_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA04G39380.2 (Glycine max), 5'ss of exon 3
GAGAAGATGACCCAAATTATGTTCGAGACATTCAATGCACCAGCAATGTATGTTGCTATCCAAGCTGTCCTTTCCCTGTATGCCAGCGGTCGCACTACAGgcacgtgtccactttcacctctta----ttaaagtttttctaggacaacgtctctgattctcgtcattggtgatctgacgacaccattctactacctatgtctcggtactctgtgtgcag
|| || ||||||||||| ||||| ||||| |||||||  || || |||||||| || |||||||||||||| ||||| ||||| || |||||||| || ||   || |     | || || ||     | | ||||||   |  |||  ||   |        |||       |||||  |||                                     
GAAAAAATGACCCAAATCATGTTTGAGACCTTCAATGTGCCTGCCATGTATGTGGCCATCCAAGCTGTCCTCTCCCTATATGCAAGTGGTCGCACAACTGgtttgtatttgtatccatctgtttcaattcatagttttgtcatcacattgttctttccctgaatcaaatactttctga-aacag------------------------------------

upper sequence: GRMZM2G053299_T01 (Zea mays), 5'ss of exon 3
lower sequence: AT5G09810.1 (Arabidopsis thaliana), 5'ss of exon 3
GAGAAGATGACCCAAATTATGTTCGAGACATTCAATGCACCAGCAATGTATGTTGCTATCCAAGCTGTCCTTTCCCTGTATGCCAGCGGTCGCACTACAGgcacgtgtccactttcacctcttattaaagtttttctaggacaacgtctctgattctcgtcattggtgatctgacgacaccattctactacctatgtctcggtactctgtgtgcag
||||||||||| || || ||||| |||||||||||||  || || ||||||||||| || || || || ||||| || |||||||| ||||| || || ||      |    | | | |||| |  |       || | | |   ||       |||  | | | ||  |      |   | ||||  |   | |||  | |              
GAGAAGATGACTCAGATCATGTTTGAGACATTCAATGTCCCTGCCATGTATGTTGCCATTCAGGCCGTTCTTTCTCTCTATGCCAGTGGTCGTACAACCGg------ttagttcttaactctaaaca-------tccaagtctgagttatattatcttcttacttgtatttacttaaagtcgttctctt---tttgtaacag--------------

upper sequence: GRMZM2G053299_T01 (Zea mays), 5'ss of exon 3
lower sequence: Vv12s0178g00200.t01 (Vitis vinifera), 5'ss of exon 2
GAGAAGATGACCCAAATTATGTTCGAGACATTCAATGCACCAGCAATGTATGTTGCTATCCAAGCTGTCCTTTCCCTGTATGCCAGCGGTCGCACTACAGgcacgtgtccactttcacctcttattaaagtttttctaggacaacgtctctgattctcgtcattggtgatctgacgacaccattc-tactacctatgtctcggtactctgtgtgcag
||||| |||||||| |||||||| ||||| ||||| | ||| || ||||||||||||||||||||||| || || ||||||||||| ||||| || |||||   ||||| |    |||  |      ||||| |   || | ||     |     ||  |  |  |||       | ||   ||| || ||    ||   || ||  |  |      
GAGAAAATGACCCAGATTATGTTTGAGACCTTCAACGTACCTGCCATGTATGTTGCTATCCAAGCTGTGCTGTCTCTGTATGCCAGTGGTCGTACAACAGgtttgtgtcaaa--gcactgc------aagttgtagaagcaaaata---caagacctttttgtgtgtgtgtgtgtgtcattgttcatattattcttgaaccgttagccatt------

upper sequence: GRMZM2G053299_T01 (Zea mays), 5'ss of exon 3
lower sequence: EFJ17401 (Selaginella moellendorffii), 5'ss of exon 2
GAGAAGATGACCCAAATTATGTTCGAGACATTCAATGCACCAGCAATGTATGTTGCTATCCAAGCTGTCCTTTCCCTGTATGCCAGCGGTCGCACTACAGgcacgtgtccactttcacct---cttattaaagtttttctag--gaca-acgtctctgattctcgtcattggtgatc----tgacgacaccattc--tactacctatgtctcggtactctgtgtgcag----------------------
|||||||||||||| || ||||||||||| |||||||  || || ||||| || || |||||||| |||||||| || || || || || |||||||| || | |       |||  ||    ||| ||  ||      | |  ||     || |||  |  ||||   | | |||     ||| |   | | |   | |||| | ||| |             |  |                      
GAGAAGATGACCCAGATCATGTTCGAGACCTTCAATGTCCCGGCCATGTACGTGGCGATCCAAGCAGTCCTTTCACTCTACGCGAGTGGACGCACTACCGgtatggagtttttttatcccttgcttgttctagacaagatggttgatgcgtgtttcttttcttcgttgcttgcgatagacatgatgcttcaagttggttctacttttgtttttccctctaacacgttgtatgatcgtggtttgtgatcag

upper sequence: GRMZM2G053299_T01 (Zea mays), 5'ss of exon 3
lower sequence: EFJ35077 (Selaginella moellendorffii), 5'ss of exon 2
GAGAAGATGACCCAAATTATGTTCGAGACATTCAATGCACCAGCAATGTATGTTGCTATCCAAGCTGTCCTTTCCCTGTATGCCAGCGGTCGCACTACAGgcacgt-gtccactttcacct---cttattaaagtttttctag--gaca-acgtctctgattctcgtcattggtgatc----tgacgacaccattc--tactacctatgtctcggtactctg-tgtgcag----------------------
|||||||||||||| || ||||||||||| |||||||  || || ||||| || || |||||||| |||||||| || || || || || |||||||| || | |  ||    |||  |||   ||| ||  ||      | |  ||     || |||  |  ||||   | | |||     ||| |   | | |   | |||| | | | ||    ||||     |  |                      
GAGAAGATGACCCAGATCATGTTCGAGACCTTCAATGTCCCGGCCATGTACGTGGCAATCCAAGCAGTCCTTTCACTCTACGCGAGTGGACGCACTACCGgtatggagttttttttttcctttgcttgttctagacaagatggttgatgcgtgtttcttttcttcgttgcttgcgatagacatgatgcttcaagttggttctacttttttttcttctctctaacacgttgtatgatcgtggtttgtgatcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32849090|gb|CD988771.1|CD988771
EST:     TGTTGCTATCCAAGCTGTCCTTTCCCTGTATGCCAGCGGTCGCACAACAG                         GTATTGTGCTCGATTCTGGTGATGGTGTGACCCACACCGTGCCAATCTACG
genomic: TGTTGCTATCCAAGCTGTCCTTTCCCTGTATGCCAGCGGTCGCACTACAGgcacgtgtcc ... ctgtgtgcagGTATTGTGCTCGATTCTGGTGATGGTGTGACCCACACCGTGCCAATCTACG
EST: gi|31353554|gb|CD437911.1|CD437911
EST:     TGTTGCTATCCAAGCTGTCCTTTCCCTGTATGCCAGCGGTCGCACAACAG                         GTATTGTGCTCGATTCTGGTGATGGTGTGACCCACACCGTGCCAATCTACG
genomic: TGTTGCTATCCAAGCTGTCCTTTCCCTGTATGCCAGCGGTCGCACTACAGgcacgtgtcc ... ctgtgtgcagGTATTGTGCTCGATTCTGGTGATGGTGTGACCCACACCGTGCCAATCTACG
EST: gi|149096741|gb|EE182516.2|EE182516
EST:     TGTTGCTATCCAAGCTGTCCTTTCCCTGTATGCCAGCGGTCGCACTACAG                         GTATTGTGCTCGATTCTGGTGATGGTGTGACCCACACCGTGCCAATCTACG
genomic: TGTTGCTATCCAAGCTGTCCTTTCCCTGTATGCCAGCGGTCGCACTACAGgcacgtgtcc ... ctgtgtgcagGTATTGTGCTCGATTCTGGTGATGGTGTGACCCACACCGTGCCAATCTACG
EST: gi|149083473|gb|EE172801.2|EE172801
EST:     TGTTGCTATCCAAGCTGTCCTTTCCCTGTATGCCAGCGGTCGCACTACAG                         GTATTGTGCTCGATTCTGGTGATGGTGTGACCCACACCGTGCCAATCTACG
genomic: TGTTGCTATCCAAGCTGTCCTTTCCCTGTATGCCAGCGGTCGCACTACAGgcacgtgtcc ... ctgtgtgcagGTATTGTGCTCGATTCTGGTGATGGTGTGACCCACACCGTGCCAATCTACG
EST: gi|149008217|gb|EE040379.2|EE040379
EST:     TGTTGCTATCCAAGCTGTCCTTTCCCTGTATGCCAGCGGTCGCACTACAG                         GTATTGTGCTCGATTCTGGTGATGGTGTGACCCACACCGTGCCAATCTACG
genomic: TGTTGCTATCCAAGCTGTCCTTTCCCTGTATGCCAGCGGTCGCACTACAGgcacgtgtcc ... ctgtgtgcagGTATTGTGCTCGATTCTGGTGATGGTGTGACCCACACCGTGCCAATCTACG
EST: gi|67025563|gb|CO454312.1|CO454312
EST:     CCAGCGGTCGCACAACAG                         GTATTGTGCTCGATTCTGGTGATGGTGTGACCCACACCGTGCCAATCTACG
genomic: CCAGCGGTCGCACTACAGgcacgtgtcc ... ctgtgtgcagGTATTGTGCTCGATTCTGGTGATGGTGTGACCCACACCGTGCCAATCTACG
EST: gi|44681801|gb|CK786849.1|CK786849
EST:     TGTTGCTATCCAAGCTGTCCTTTCCCTGTATGCCAGCGGTCGCACAACAG                         GTATTGTGCTCGATTCTGGTGATGGTGTGACCCACACCGTGCCAATCTACG
genomic: TGTTGCTATCCAAGCTGTCCTTTCCCTGTATGCCAGCGGTCGCACTACAGgcacgtgtcc ... ctgtgtgcagGTATTGTGCTCGATTCTGGTGATGGTGTGACCCACACCGTGCCAATCTACG
EST: gi|149109036|gb|EE189971.2|EE189971
EST:     TGTTGCTATCCAAGCTGTCCTTTCCCTGTATGCCAGCGGTCGCACTACAG                         GTATTGTGCTCGATTCTGGTGATGGTGTGACCCACACCGTGCCAATCTACG
genomic: TGTTGCTATCCAAGCTGTCCTTTCCCTGTATGCCAGCGGTCGCACTACAGgcacgtgtcc ... ctgtgtgcagGTATTGTGCTCGATTCTGGTGATGGTGTGACCCACACCGTGCCAATCTACG
EST: gi|211107576|gb|FL066805.1|FL066805
EST:     TGTTGCTATCCAAGCTGTCCTTTCCCTGTATGCCAGCGGTCGCACAACAG                         GTATTGTGCTCGATTCTGGTGATGGTGTGACCCACACCGTGCCAATCTACG
genomic: TGTTGCTATCCAAGCTGTCCTTTCCCTGTATGCCAGCGGTCGCACTACAGgcacgtgtcc ... ctgtgtgcagGTATTGTGCTCGATTCTGGTGATGGTGTGACCCACACCGTGCCAATCTACG
EST: gi|31349350|gb|CD433707.1|CD433707
EST:     TGTTGCTATCCAAGCTGTCCTTTCCCTGTATGCCAGCGGTCGCACAACAG                         GTATTGTGCTCGATTCTGGTGATGGTGTGACCCACACCGTGCCAATCTACG
genomic: TGTTGCTATCCAAGCTGTCCTTTCCCTGTATGCCAGCGGTCGCACTACAGgcacgtgtcc ... ctgtgtgcagGTATTGTGCTCGATTCTGGTGATGGTGTGACCCACACCGTGCCAATCTACG
EST: gi|67010655|gb|CO439404.1|CO439404
EST:     TGTTGCTATCCAAGCTGTCCTTTCCCTGTATGCCAGCGGTCGCACAACAG                         GTATTGTGCTCGATTCTGGTGATGGTGTGACCCACACCGTGCCAATCTACG
genomic: TGTTGCTATCCAAGCTGTCCTTTCCCTGTATGCCAGCGGTCGCACTACAGgcacgtgtcc ... ctgtgtgcagGTATTGTGCTCGATTCTGGTGATGGTGTGACCCACACCGTGCCAATCTACG
EST: gi|211107577|gb|FL066806.1|FL066806
EST:     TGTTGCTATCCAAGCTGTCCTTTCCCTGTATGCCAGCKGTCGCACAACAG                         GTATTGTGCTCGATTCTGGTGATGGTGTGACCCACAC-GTGCCAATCTACG
genomic: TGTTGCTATCCAAGCTGTCCTTTCCCTGTATGCCAGCGGTCGCACTACAGgcacgtgtcc ... ctgtgtgcagGTATTGTGCTCGATTCTGGTGATGGTGTGACCCACACCGTGCCAATCTACG
EST: gi|32910744|gb|CF015556.1|CF015556
EST:     TGTTGCTATCCAAGCTGTCCTTTCCCTGTATGCCAGCGGTCGCACAACAG                         GTATTGTGCTCGATTCTGGTGATGGTGTGACCCACACCGTGCCAATCTACG
genomic: TGTTGCTATCCAAGCTGTCCTTTCCCTGTATGCCAGCGGTCGCACTACAGgcacgtgtcc ... ctgtgtgcagGTATTGTGCTCGATTCTGGTGATGGTGTGACCCACACCGTGCCAATCTACG
EST: gi|149098911|gb|EE184924.2|EE184924
EST:     TGTTGCTATCCAAGCTGTCCTTTCCCTGTATGCCAGCGGTCGCACTACAG                         GTATTGTGCTCGATTCTGGTGATGGTGTGACCCACACCGTGCCAATCTACG
genomic: TGTTGCTATCCAAGCTGTCCTTTCCCTGTATGCCAGCGGTCGCACTACAGgcacgtgtcc ... ctgtgtgcagGTATTGTGCTCGATTCTGGTGATGGTGTGACCCACACCGTGCCAATCTACG
EST: gi|148931785|gb|EC875069.2|EC875069
EST:     TGTTGCTATCCAAGCTGTCCTTTCCCTGTATGCCAGCGGTCGCACTACAG                         GTATTGTGCTCGATTCTGGTGATGGTGTGACCCACACCGTGCCAATCTACG
genomic: TGTTGCTATCCAAGCTGTCCTTTCCCTGTATGCCAGCGGTCGCACTACAGgcacgtgtcc ... ctgtgtgcagGTATTGTGCTCGATTCTGGTGATGGTGTGACCCACACCGTGCCAATCTACG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 357

GAGAAGATGACCCAAATTATGTTCGAGACATTCAATGCACCAGCAATGTATGTTGCTATCCAAGCTGTCCTTTCCCTGTATGCCAGCGGTCGCACTACAGgcacgtgtcc ... ctgtgtgcagGTATTGTGCTCGATTCTGGTGATGGTGTGACCCACACCGTGCCAATCTACGAGGGATACGCGCTCCCTCATGCCATTCTTAGGCTGGATCTTGCTGGCCG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 374

GAGAAGATGACCCAAATTATGTTCGAGACATTCAATGCACCAGCAATGTATGTTGCTATCCAAGCTGTCCTTTCCCTGTATGCCAGCGGTCGCACTACAGgcacgtgtcc ... ctgtgtgcagGTATTGTGCTCGATTCTGGTGATGGTGTGACCCACACCGTGCCAATCTACGAGGGATACGCGCTCCCTCATGCCATTCTTAGGCTGGATCTTGCTGGCCG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 206

GAGAAGATGACCCAAATTATGTTCGAGACATTCAATGCACCAGCAATGTATGTTGCTATCCAAGCTGTCCTTTCCCTGTATGCCAGCGGTCGCACTACAGgcacgtgtcc ... ctgtgtgcagGTATTGTGCTCGATTCTGGTGATGGTGTGACCCACACCGTGCCAATCTACGAGGGATACGCGCTCCCTCATGCCATTCTTAGGCTGGATCTTGCTGGCCG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 484

GAGAAGATGACCCAAATTATGTTCGAGACATTCAATGCACCAGCAATGTATGTTGCTATCCAAGCTGTCCTTTCCCTGTATGCCAGCGGTCGCACTACAGgcacgtgtcc ... ctgtgtgcagGTATTGTGCTCGATTCTGGTGATGGTGTGACCCACACCGTGCCAATCTACGAGGGATACGCGCTCCCTCATGCCATTCTTAGGCTGGATCTTGCTGGCCG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAGAAGATGACCCAAATTATGTTCGAGACATTCAATGCACCAGCAATGTATGTTGCTATCCAAGCTGTCCTTTCCCTGTATGCCAGCGGTCGCACTACAGgcacgtgtccactttcacctcttattaaagtttttctaggacaacgtctctgattctcgtcattggtgatctgacgacaccattctactacctatgtctcggtactctgtgtgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG