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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCATCGGCTCGTGGTCAACCGGGACCCCAAGTTCACCAACTTCGTCGAGgtgggtgctttgagctcttgatttggattccagttgtgcttagggtattttgtcatgagattggggatattgtttggaagaaagtgataattcatatcct...

Basic information

species Zea mays
transcript GRMZM2G052713_T03
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G052713_T03 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os12g10560.1 (Oryza sativa), 5'ss of exon 3
GTGCATCGGCTCGTGGTCAACCGGGACCCCAAGTTCACCAACTTCGTCGAGgtgggtgctttgagctcttgatttggattccagttgtgc----ttagggtattttgtcatgagattggggatattgtttggaagaaagtgataattcatatcct
||||||||||| |||||||||||||| |||||||||||||||||||| |||||| || ||| || || ||  |||||     |||| |||     |  ||   ||  |  | |||        |     ||    || ||  |   |  |   | 
GTGCATCGGCTGGTGGTCAACCGGGATCCCAAGTTCACCAACTTCGTTGAGgtgagttctt-gatcttttattttgggggg-agttatgcgattcttaggcgattcatggt-agaagaaaaccaagagctgcgtaaaggtctttgcttttgctc-

upper sequence: GRMZM2G052713_T03 (Zea mays), 5'ss of exon 3
lower sequence: Vv18s0001g14240.t01 (Vitis vinifera), 5'ss of exon 4
GTGCATCGGCTCGTGGTCAACCGGGACCCCAAGTTCACCAACTTCGTCGAGgtgggtgctttgagctcttgatttggattccagttgtgcttagggtattttgtca-tgagattgggg-atattgtttggaagaaagtgataattcatatcct--
|| || ||  | || ||||||||||| ||||||||||| |||||||| |||||   | ||||   |||    ||||| ||           ||||| |   ||  | ||  |||     || ||||||  |        | ||||  ||   |  
GTTCACCGATTGGTTGTCAACCGGGATCCCAAGTTCACTAACTTCGTTGAGgtattttcttt---ctcgacgtttggcttgtgagaaaatctagggaacaatgcaaatgcaattattttatgttgtttc-attttcacaagaatttttagaattg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211344147|gb|FL188317.1|FL188317
EST:     TGCATCGGCTCGTGGTCAACCGGGACCCCAAGTTCACMAACTTCGTCGAG                         TTCCGCACGCACAAAGTTATATATAGGAGATATGCAGGACTTTTTTYCTCT
genomic: TGCATCGGCTCGTGGTCAACCGGGACCCCAAGTTCACCAACTTCGTCGAGgtgggtgctt ... tctcatgcagTTCCGCACGCACAAAGTTATATATAGGAGATATGCAGGACTTTTTTTCTCT
EST: gi|211344138|gb|FL188308.1|FL188308
EST:     TGCATCGGCTCGTGGTCAACCGGGACCCCAAGTTCACCAACTTCGTCGAG                         TTCCGCACGCACAAAGTTATATATAGGAGATATGCAGGACNNNNNNNCTCT
genomic: TGCATCGGCTCGTGGTCAACCGGGACCCCAAGTTCACCAACTTCGTCGAGgtgggtgctt ... tctcatgcagTTCCGCACGCACAAAGTTATATATAGGAGATATGCAGGACTTTTTTTCTCT
EST: gi|211341749|gb|FL188299.1|FL188299
EST:     TGCATCGGCTCGTGATCAACCGGGACCCCAAGTTCACCAACTTCGTCGAG                         TTCCGCACGCACAAAGTTATATATAGGAGATATGCAGGACNNNNNNNCTCT
genomic: TGCATCGGCTCGTGGTCAACCGGGACCCCAAGTTCACCAACTTCGTCGAGgtgggtgctt ... tctcatgcagTTCCGCACGCACAAAGTTATATATAGGAGATATGCAGGACTTTTTTTCTCT