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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTGTGTGCTTGGTTGATGCAAGCGGCAACCGCACCATGCGTCCGTGCCTATCTAGCGCAGTCAAGATACAGgtatgtccttatttggtgtgttaaatgttacttatatctcttaacaatattatgattgttgagatcctttgtccatctaacag

Basic information

species Zea mays
transcript GRMZM2G051842_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G051842_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g01620.1 (Oryza sativa), 5'ss of exon 3
TGTGTGTGCTTGGTTGATGCAAGCGGCAACCGCACCATGCGTCCGTGCCTATCTAGCGCAGTCAAGATACAGgtatgtccttatttggtgtg---tta-aatgttacttatatctcttaacaatattatgattgttgagatcctttgtccatctaacag
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TGTGCATGCTTGGTCGATGCAAGTGGCAATCGCACCATGCGCCCTTGCCTATCTAGTGCAGTCAAGCTCCAGgta-acccttgcttgatgcagtcttacactgttactttt--ctcttaacagtcgtaggcttgatacgatcatttactcat-taacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71446345|gb|DR827395.1|DR827395
EST:     GCGGCAACCGCACCATGCGTCCGTGCCTATCTAGCGCAGTCAAGATACAG                         GCCAATGAATTTAGAAAGGAGGATTTCAAAGGCTCCAAG
genomic: GCGGCAACCGCACCATGCGTCCGTGCCTATCTAGCGCAGTCAAGATACAGgtatgtcctt ... catctaacagGCCAATGAATTTAGAAAGGAGGATTTCAAAGGCTCCAAG
EST: gi|91057161|gb|EB167579.1|EB167579
EST:     GCGGCAACCGCACCATGCGTCCGTGCCTATCTAGCGCAGTCAAGATACAG                         GCCAATGAATTTAGAAAGGAGGATTTCAAAGGCTCCAAG
genomic: GCGGCAACCGCACCATGCGTCCGTGCCTATCTAGCGCAGTCAAGATACAGgtatgtcctt ... catctaacagGCCAATGAATTTAGAAAGGAGGATTTCAAAGGCTCCAAG
EST: gi|76293563|gb|DV033131.1|DV033131
EST:     GCGGCAACCGCACCATGCGTCCGTGCCTATCTAGCGCAGTCAAGATACAG                         GCCAATGAATTTAGAAAGGAGGATTTCAAAGGCTCCAAG
genomic: GCGGCAACCGCACCATGCGTCCGTGCCTATCTAGCGCAGTCAAGATACAGgtatgtcctt ... catctaacagGCCAATGAATTTAGAAAGGAGGATTTCAAAGGCTCCAAG
EST: gi|76286678|gb|DV026246.1|DV026246
EST:     GCGGCAACCGCACCATGCGTCCGTGCCTATCTAGCGCAGTCAAGATACAG                         GCCAATGAATTTAGAAAGGAGGATTTCAAAGGCTCCCAG
genomic: GCGGCAACCGCACCATGCGTCCGTGCCTATCTAGCGCAGTCAAGATACAGgtatgtcctt ... catctaacagGCCAATGAATTTAGAAAGGAGGATTTCAAAGGCTCCAAG
EST: gi|71771409|gb|DR969346.1|DR969346
EST:     GCGGCAACCGCACCATGCGTCCGTGCCTATCTAGCGCAGTCAAGATACAG                         GCCAATGAATTTAGAAAGGAGGATTTCAAAGGCTCCAAG
genomic: GCGGCAACCGCACCATGCGTCCGTGCCTATCTAGCGCAGTCAAGATACAGgtatgtcctt ... catctaacagGCCAATGAATTTAGAAAGGAGGATTTCAAAGGCTCCAAG
EST: gi|78105422|gb|DV523840.1|DV523840
EST:     AGCGCAGTCAAGATACAG                         GCCAATGAATTTAGAAAGGAGGATTTCAAAGGCTCCAAG
genomic: AGCGCAGTCAAGATACAGgtatgtcctt ... catctaacagGCCAATGAATTTAGAAAGGAGGATTTCAAAGGCTCCAAG
EST: gi|148987163|gb|EE030992.2|EE030992
EST:     GCGGCAACCGCACCATGCGTCCGTGCCTATCTAGCGCAGTCAAGATACAG                         GCCAATGAATTTAGAAAGGAGGATTTCAAAGGCTCCAAG
genomic: GCGGCAACCGCACCATGCGTCCGTGCCTATCTAGCGCAGTCAAGATACAGgtatgtcctt ... catctaacagGCCAATGAATTTAGAAAGGAGGATTTCAAAGGCTCCAAG
EST: gi|71447665|gb|DR828715.1|DR828715
EST:     GCGGCAACCGCACCATGCGTCCGTGCCTATCTAGCGCAGTCAAGATACAG                         GCCAATGAATTTAGAAAGGAGGATTTCAAAGGCTCCAAG
genomic: GCGGCAACCGCACCATGCGTCCGTGCCTATCTAGCGCAGTCAAGATACAGgtatgtcctt ... catctaacagGCCAATGAATTTAGAAAGGAGGATTTCAAAGGCTCCAAG
EST: gi|28569018|gb|CB280893.1|CB280893
EST:     GCGGCAACCGCACCATGCGTCCGTGCCTATCTAGCGCAGTCAAGATACAG                         GCCAATGAATTTAGAAAGGAGGATTT
genomic: GCGGCAACCGCACCATGCGTCCGTGCCTATCTAGCGCAGTCAAGATACAGgtatgtcctt ... catctaacagGCCAATGAATTTAGAAAGGAGGATTT
EST: gi|149088934|gb|EE178077.2|EE178077
EST:     GCGGCAACCGCACCATGCGTCCGTGCCTATCTAGCGCAGTCAAGATACAG                         GCCAATGAATTTAGAAAGGAGGATTTCAAAGGCTCCAAG
genomic: GCGGCAACCGCACCATGCGTCCGTGCCTATCTAGCGCAGTCAAGATACAGgtatgtcctt ... catctaacagGCCAATGAATTTAGAAAGGAGGATTTCAAAGGCTCCAAG
EST: gi|148959742|gb|EC905640.2|EC905640
EST:     GCGGCAACCGCACCATGCGTCCGTGCCTATCTAGCGCAGTCAAGATACAG                         GCCAATGAATTTAGAAAGGAGGATTTCAAAGGCTCCAAG
genomic: GCGGCAACCGCACCATGCGTCCGTGCCTATCTAGCGCAGTCAAGATACAGgtatgtcctt ... catctaacagGCCAATGAATTTAGAAAGGAGGATTTCAAAGGCTCCAAG