Sequence
atgc intronic sequence ATGC exonic sequenceCACATCAACTAATCATAAATGCTTTAACAAACCAGAAGAGATGGGCATTGAGGAAGATGTCATCAGGAAGCATACAACCCCAGACTACAGGGCCCCAGAGgtaaaagaacagatgtctgcacgatggatttaaaataaaataaccttgtacaggctccaatgatttcatgatggcttttcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G051079_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os02g37880.3 (Oryza sativa), 5'ss of exon 3
CACATCAACTAATCATAAATGCTTTAACAAACCAGAAGAGATGGGCATTGAGGAAGATGTCATCAGGAAGCATACAACCCCAGACTACAGGGCCCCAGAGgtaaaagaacagatgtctgcacgatggatttaaaataaaataaccttgtacaggctccaatgatttcatgatggc--ttttcag
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CACATCAACAAACCATAAATGCTTTGATAGGCCAGAAGAGATGGGGATTGAGGAAGATATCATCCGGAAGCATACAACCCCAGCATATAGGGCCCCTGAGgtaaagaaacaattgcccatggagta-atttatagtttttaaaacctgtgtaacccccagtgaccccatggatgcattttccag
upper sequence: GRMZM2G051079_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA15G42460.1 (Glycine max), 5'ss of exon 4
CACATCAACTAATCATAAATGCTTTAACAAACCAGAAGAGATGGGCATTGAGGAAGATGTCATCAGGAAGCATACAACCCCAGACTACAGGGCCCCAGAGgtaaaagaa-cagatgtctgcacgatggatttaaaataaaataaccttgtacaggctccaatgatt--------tcatgatggcttttcag---------
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CACTTCCACCAATCACAAACGTTTTGAGAAGCCAGAAGAAATGGGGATTGAGGAAGACAATATCAGGAAGTACACAACCCCTGCCTACAGGGCCCCTGAGgtaaatttgtcttctctacctaaaattaggtcaccattgaaggttgtggtgaaagcaccacagcctcttccaagttatgggagttcctgggttcaatctt
upper sequence: GRMZM2G051079_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA08G15920.1 (Glycine max), 5'ss of exon 4
CACATCAACTAATCATAAATGCTTTAACAAACCAGAAGAGATGGGCATTGAGGAAGATGTCATCAGGAAGCATACAACCCCAGACTACAGGGCCCCAGAGgtaaaagaa-cagatgtctgcacgatggatttaaaataaaataaccttgtacaggctccaatgatttcatgatggcttttcag-----------------
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CACTTCCACCAATCACAAACGTTTTGAAAAGCCAGAAGAAATGGGGATTGAGGAAGACAATATCAGGAAGTACACAACCCCTGCCTACAGGGCCCCCGAGgtaaatttgtcttctctaaataaaattaggtcaccactgaaggttgtggtgaaagcaccacagcctcttccaagttatgggagtgcctgggttcaattctMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|101396493|gb|EB820173.1|EB820173EST: AGGAAGATGTCATCAGGAAGCATACAACCCCAGACTACAGGGCCCCAGAG ATGTGGGATCTCTACAGAAGAGAAGTTATCAGTGAAAAAGTTGACATTTGG
genomic: AGGAAGATGTCATCAGGAAGCATACAACCCCAGACTACAGGGCCCCAGAGgtaaaagaac ... ggcttttcagATGTGGGATCTCTACAGAAGAGAAGTTATCAGTGAAAAAGTTGACATTTGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CACATCAACTAATCATAAATGCTTTAACAAACCAGAAGAGATGGGCATTGAGGAAGATGTCATCAGGAAGCATACAACCCCAGACTACAGGGCCCCAGAGgtaaaagaacagatgtctgcacgatggatttaaaataaaataaccttgtacaggctccaatgatttcatgatggcttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG