1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
AAATCTGCTGGCGGTGTATTGCTACCAAAATCTGCTGTTAAGTTTGAGAGATATCTGATGGGTGAGgtgagatcttgaaggcactactatctgtttctgtgattgttaattttagtaggatatagtctgaccacattgtattgttcatgctag
species | Zea mays |
transcript | GRMZM2G050961_T04 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TATTGCTACCAAAATCTGCTGTTAAGTTTGAGAGATATCTGATGGGTGAG ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAGGTAEST: gi|211485846|gb|FK973438.1|FK973438
genomic: TATTGCTACCAAAATCTGCTGTTAAGTTTGAGAGATATCTGATGGGTGAGgtgagatctt ... ttcatgctagATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAGGTA
EST: TATTGCTACCAAAATCTGCTGTTAAGTTTGAGAGATATCTGATGGGTGAG ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAEST: gi|74237817|gb|DT645731.1|DT645731
genomic: TATTGCTACCAAAATCTGCTGTTAAGTTTGAGAGATATCTGATGGGTGAGgtgagatctt ... ttcatgctagATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGA
EST: TATTGCTACCAAAATCTGCTGTTAAGTTTGAGAGATATCTGATGGGTGAG ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAGGTAEST: gi|13558000|gb|BG549356.1|BG549356
genomic: TATTGCTACCAAAATCTGCTGTTAAGTTTGAGAGATATCTGATGGGTGAGgtgagatctt ... ttcatgctagATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAGGTA
EST: TATTGCTACCAAAATCTGCTGTTAAGTTTGAGAGATATCTGATGGGTGAG ATTCTATCGATCGGTGCTGAAGTCAGTGGAGTTGAGGCTGGGAAGAAGGTEST: gi|166483222|gb|EG111081.1|EG111081
genomic: TATTGCTACCAAAATCTGCTGTTAAGTTTGAGAGATATCTGATGGGTGAGgtgagatctt ... ttcatgctagATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAGGT
EST: CCAAAATCTGCTGTTAAGTTTGAGAGATATCTGATAGGGTGAG ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAGGTEST: gi|166409968|gb|EG192262.1|EG192262
genomic: CCAAAATCTGCTGTTAAGTTTGAGAGATATCTGAT-GGGTGAGgtgagatctt ... ttcatgctagATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAGGT
EST: CTGCTGTTAAGTTTGAGAGATATCTGATGGGTGAG ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAGGT
genomic: CTGCTGTTAAGTTTGAGAGATATCTGATGGGTGAGgtgagatctt ... ttcatgctagATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAATCTGCTGGCGGTGTATTGCTACCAAAATCTGCTGTTAAGTTTGAGAGATATCTGATGGGTGAGgtgagatcttgaaggcactactatctgtttctgtgattgttaattttagtaggatatagtctgaccacattgtattgttcatgctag
- - - - - - - - - - - - - - - - GCTGTT