1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CTGATTGGAATTATACTGCCTTGGGCCATCTTTGTTGGGATTTACTTCAAAAAGAAGAATTTTTATGATTTGCACCATGGCATACTGGgtattatacatatttatgatcccttcaatatgttgattagtacaagagaaacacatctgaaatggaaattttgtag
species | Zea mays |
transcript | GRMZM2G050658_T03 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GATTTACTTCAAAAAGAAGAATTTTTATGATTTGCACCATGGCATACTGG GGATTCTATACTCAGTGCTGATAACTGCAGTGATTACTGATGCAATTAAGGEST: gi|211068527|gb|FL399017.1|FL399017
genomic: GATTTACTTCAAAAAGAAGAATTTTTATGATTTGCACCATGGCATACTGGgtattataca ... aattttgtagGGATTCTATACTCAGTGCTGATAACTGCAGTGATTACTGATGCAATTAAGG
EST: GATTTACTTCAAAAAGAAGAATTTTTATGATTTGCACCATGGCATACTGG GGATTCTATACTCAGTGCTGATAACTGCAGTGATTACTGATGCAEST: gi|149083452|gb|EE172778.2|EE172778
genomic: GATTTACTTCAAAAAGAAGAATTTTTATGATTTGCACCATGGCATACTGGgtattataca ... aattttgtagGGATTCTATACTCAGTGCTGATAACTGCAGTGATTACTGATGCA
EST: GATTTACTTCAAAAAGAAGAATTTTTATGATTTGCACCATGGCATACTGG GGATTCTATACTCAGTGCTGATAACTGCAGTGATTACTGATGCAATTAAGGEST: gi|78103666|gb|DV522094.1|DV522094
genomic: GATTTACTTCAAAAAGAAGAATTTTTATGATTTGCACCATGGCATACTGGgtattataca ... aattttgtagGGATTCTATACTCAGTGCTGATAACTGCAGTGATTACTGATGCAATTAAGG
EST: GATTTACTTCAAAAAGAAGAATTTTTATGATTTGCACCATGGCATACTGG GGATTCTATACTCAGTGCTGATAACTGCAGTGATTACTGATGCAATTAAGG
genomic: GATTTACTTCAAAAAGAAGAATTTTTATGATTTGCACCATGGCATACTGGgtattataca ... aattttgtagGGATTCTATACTCAGTGCTGATAACTGCAGTGATTACTGATGCAATTAAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGATTGGAATTATACTGCCTTGGGCCATCTTTGTTGGGATTTACTTCAAAAAGAAGAATTTTTATGATTTGCACCATGGCATACTGGgtattatacatatttatgatcccttcaatatgttgattagtacaagagaaacacatctgaaatggaaattttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG